BAC Information

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BAC

Clone NameMSMg01-406K01
Chromosome1 (Build37)
Map Location 177,668,297 - 177,668,539
singlet/doubletsinglet
Overlap geneWdr64
Upstream geneFmn2, Grem2, Rgs7, Fh1, Kmo, Opn3, Chml
Downstream geneExo1, Gm104, Pld5, B020018G12Rik, Cep170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406K01.T7 (MSMg01no406_k01.b1)MSMg01-406K01.TJ (MSMg01no406_k01.g1)
ACCAG504777AG504778
length806778
length of high quality
(start - end)
244 (69 - 312)248 (73 - 320)
definitionCHROMAT_FILE: MSMg01no406_k01.b1 PHD_FILE: MSMg01no406_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:00 2005CHROMAT_FILE: MSMg01no406_k01.g1 PHD_FILE: MSMg01no406_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATGTGTTCCGAAGAACCACCATTCAAAATACAATGACTGTACCATA
TTACATTTTGCCTGGTGACATAAGCATCAGTCCATTAGCCCAGCTGGATA
CCTATACCTTGTATAGCTCTTTGTTCTTCATGATCCCCACCTCTACCTCC
ACCACCAGGCACCAAGTTGTGTATGTTACCTCAAATAATATACTTCTGAG
TCTGTTTTATCTTCTTATCTTTCTCCCTTCTACTTCCCAGGCTCTTTTCA
TATGATCTCCATATTTTATTATCCAGCCCTCTCAATAACCGTCCATATTT
TGAGATCTGCATACCGCACGTTTGTGGACTTGTACCTGAATTTCCTTCTC
ACTTTATGTATCTCTACCCTGAATCTCTTTACTTAACTTCTCTGATTCCC
TTATGAGCTCTTCTGTCTTCCCAGTTTATCTTATCTTTGTTTTTGTTATT
TACGATCGTCATCTTCGATATTTCTTTTTTCTCTTCCTCTTTCTTCACTT
ATCTTTCACATCCTTTGCTATGTCCTTTAATTTCTCCACCCCCCATCGAA
ATATCGTTCTTATTTCTTTTCACACATCATCTTTTCTCTATACCTGTTTA
TCTCCTCTTTATTACAATACTTTTTTCTTTTGTTATGTTTTTTTACTAAA
CCCCCCTCTTCTCTTGATAAACTCCTCTTTTACTTCTCACACCCCTCTCA
TCATCCATCTCTATCCCCTCATCTCACTATTTCTCACTCCTTATTATCAC
CCCTCG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAGATCTTTCCTATTCTGTGCTATCA
CATAGGTCTTTTTTCTTGTAAAAATCATACAGAAACTGACTATGTAGCTC
TGGCTGGGCTGGGCTGGAACTCACTCTATTAAACTAGTCTAAACTAGCCC
AAACTAGTCTTAAACTCACAAAGATCTACTTTCTGAGTGCTGAAGATTAA
AGCCATGTATCACTATGACAGGCATTAATACATTCTAGGGACTCTGAATC
AAAAAATGAATGAGCCAGGTATGTTGACACATAACTTTAATTCCAGCACG
GTGGCTGTGCAGGCAGAGGCAGTCAGATCTCCTATGAACTGGAGGCCAGT
CTGTCTACCTAGTGAATTACAGGACAGTTATTGCTATGTAGAGAGGTCCT
GTTTTACAACATATGATGACGATGATCCCCTGAATTTGCAAAGACTTGCC
AATCTCCATTTGTTAGCTGTATACTTGCACCCTTGTTACCAGGCTACTCT
TGAACTGCCTTCTGTTTGATTTTGTATACCCTCATAGCACCTTGTCCTAT
TTGACCTCCCCTTATACTAATGTCTATGTCATTCATTTAACCCTCCCCTT
TTGTATACTTGTTCTTTCTTCCATCTTTGACGCACCTCTCTTCAAACCAC
CACCTTCTCTTTGGTCCCTCTTTTCCTAACAATTTATTCTTATCCTTCAT
TAATACGTTTAATTCCCGTCTTTATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_k01.b1 MSMg01no406_k01.b1 CHROMAT_FILE:
MSMg01no406_k01.b1 PHD_FILE: MSMg01no406_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:00 2005
         (244 letters)



>mm_chr1_177668097_177668740
          Length = 644

 Score =  431 bits (223), Expect = e-125
 Identities = 238/243 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaccattcaaaatacaatgactgtaccatattacattttgcctggtgacataagcatc 60
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 accaccattcaaaatacagtgactgtaccgtattacattttgcctggtgacataagcatc 260

                                                                       
Query: 61  agtccattagcccagctggatacctataccttgtatagctctttgttcttcatgatcccc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 agtccattagcccagctggatacctataccttgtatagctctttgttctttatgatcccc 320

                                                                       
Query: 121 acctctacctccaccaccaggcaccaagttgtgtatgttacctcaaataatatacttctg 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctctacctccaccaccaagcaccaagttgtgtatgttacctcaaataatatacttctg 380

                                                                       
Query: 181 agtctgttttatcttcttatctttctcccttctacttcccaggctcttttcatatgatct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 agtctgttttatcttcttatctttctcccttctacttcccaggctcttttcatatggtct 440

              
Query: 241 cca 243
           |||
Sbjct: 441 cca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)