TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTACTGTATCCCCAAGTTGTCAGCTTCAAGGTCTTTCTAAGACATTG
GAACTCTGGCAAAGACTTAACTGTATCAGGATTCAATTTTAAAAGGCAGG
GAACAGGAAGGAGGGGGTGATGACTGGCTCCTTAGTACAAGGCCATTTGG
CTTGTTAGGGTTGGAGGCTGTGAAGGGCTTGCCTTCTCATGGTATGATCT
CCAACCTCTCCACCCTTTCAATTAAATTTAATAAGGCCACACTTACCTGA
GGTGATCAAATGATCTTCTCATCATTGGATGAGCGGGCATTAACCATGTC
TGGGAGAGCACTGACCCGATTCCTCCTGTGGGTGCTGTCACGGCCCACAA
TCATGGCTCTTGGTATCTTTTGGGGAGGGGAGGCCGAGCCTTAGAAACAT
TCGTTTGGTTGTAACTGGAACTAGATACCAACCTCCATCCAAACCAGGTG
GTCTCTCTCAGGTAACTCAGAAATGGTCAAGTTGGACCTTCCCCTGCAAT
TCTTAGCCTCGTACCCACACTGGTGCCCATACTGGATTCATATTATCTTG
AACCAGCATGTACAGTTCTGAGTACTGTGCAGCTCCCAAAGGAGAATTGT
GAACCTCAGATTTCGCACGGTCTCCTACAAGAATTATGCCACTTTGTACA
CCACAACTTTTGGCTCTTATGCTATATTATGAGCTGGAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGTAATTTTTTTTTTAATTTTTGA
AGGGATAGAGATACTTTCCTGGGCTATTTTCTGGAATATAAAATAAAAGA
ATAAAACTTCCATGTTGAAGTGTTTGGCAATTTCCACCATCATCTTTTAA
AGACATTTAAGCACATTATAAATGATGAAGGGAGACATAAAAGTACAATA
ATCACTATGTGTATTCTTAGCTGAAATGAATGTAATAGCGGCATGGCTAT
ATAATTACCTTGAAATATTCTCTTCTGAATAGATTTTACAAGAATTACTG
AGAGAAATGACTTGTATCTTAGCATAATACCATCGGCAGGCTATTCTCTA
AGATGGTTTTGCATTTGATTCACTCTTAGGAATGGATACTTTTGGGCCTT
CCATAATTATCCTCTTATCATGAGATGAAACACCACACTGCACAGAAATT
CAAGCTGAATTTACTCTAATAATATATCAAAATGCAGTCTAATTACTAAT
ACAACTAGAAAAATTATATTTCCTTCATTAGTAAGAGCCACAAGTAATAA
ATAAAAATACAGATGGCAGTATAGAATCCATTTGTATGTTTAAGACACTC
TATGTTTGAAAATGAAGAGTAATGTTCCCTCATGAGATGTAGGGGTCATT
ATCATGGAGACTTGACTATCAGTTTACAAATGAAATATATACCTT

Query= MSMg01no407_c13.g1 MSMg01no407_c13.g1 CHROMAT_FILE:
MSMg01no407_c13.g1 PHD_FILE: MSMg01no407_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:43 2005
         (586 letters)



>mm_chr1_28625207_28626191
          Length = 985

 Score = 1110 bits (574), Expect = 0.0
 Identities = 583/586 (99%), Gaps = 1/586 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtaattttttttttaatttttgaagggatagagatactttcctgggctattttctgg 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agtgtaa-tttttttttaatttttgaagggatagagatactttcctgggctattttctgg 727

                                                                       
Query: 61  aatataaaataaaagaataaaacttccatgttgaagtgtttggcaatttccaccatcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aatataaaataaaagaataaaacttccatgttgaagtgtttggcaatttccaccatcatc 667

                                                                       
Query: 121 ttttaaagacatttaagcacattataaatgatgaagggagacataaaagtacaataatca 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 666 ttttaaagacatttaagcacattataaaagatgaagggagacataaaagtacaataatca 607

                                                                       
Query: 181 ctatgtgtattcttagctgaaatgaatgtaatagcggcatggctatataattaccttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctatgtgtattcttagctgaaatgaatgtaatagcggcatggctatataattaccttgaa 547

                                                                       
Query: 241 atattctcttctgaatagattttacaagaattactgagagaaatgacttgtatcttagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atattctcttctgaatagattttacaagaattactgagagaaatgacttgtatcttagca 487

                                                                       
Query: 301 taataccatcggcaggctattctctaagatggttttgcatttgattcactcttaggaatg 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 486 taataccatcggcaggctattctctaagatggttttgcgtttgattcactcttaggaatg 427

                                                                       
Query: 361 gatacttttgggccttccataattatcctcttatcatgagatgaaacaccacactgcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gatacttttgggccttccataattatcctcttatcatgagatgaaacaccacactgcaca 367

                                                                       
Query: 421 gaaattcaagctgaatttactctaataatatatcaaaatgcagtctaattactaatacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaaattcaagctgaatttactctaataatatatcaaaatgcagtctaattactaatacaa 307

                                                                       
Query: 481 ctagaaaaattatatttccttcattagtaagagccacaagtaataaataaaaatacagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctagaaaaattatatttccttcattagtaagagccacaagtaataaataaaaatacagat 247

                                                         
Query: 541 ggcagtatagaatccatttgtatgtttaagacactctatgtttgaa 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggcagtatagaatccatttgtatgtttaagacactctatgtttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space:   561600
Effective search space used:   561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)