Query= MSMg01no407_e19.b1 MSMg01no407_e19.b1 CHROMAT_FILE:
MSMg01no407_e19.b1 PHD_FILE: MSMg01no407_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:54 2005
(536 letters)
>mm_chr1_83122895_83123830
Length = 936
Score = 930 bits (481), Expect = 0.0
Identities = 509/531 (95%), Gaps = 20/531 (3%)
Strand = Plus / Minus
Query: 1 actaacttagacaatatgtactgggtacctggcatgtgacagtatgtcttcctagcatga 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 actaacttagacgatatgtactgggtacctggcatgtgacagtatgtcttcctagcatga 472
Query: 61 gacagtatggtgaacatttcaggcatgttacatatatctggaatgctactagtggtctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gacagtatggtgaacatttcaggcatgttacatatatctggaatgctactagtggtctca 412
Query: 121 gaatttccttctgccccaacactataaagatataagcatcggggctacactggcccggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 gaatttccttctgccccaacactataaagatataagcatcggggctacactggtccggat 352
Query: 181 ttaattctcagcctcacctcttactgagcacacagtactgatcatcactatcagaaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttaattctcagcctcacctcttactgagcacacagtactgatcatcactatcagaaaatg 292
Query: 241 agttttaactgcttcccttcctcttctgttgcccagagtagacacatcggccaataaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agttttaactgcttcccttcctcttctgttgcccagagtagacacatcggccaataaggt 232
Query: 301 accagcatggcaaacagcttgatcctatctc--------------------agagagaga 340
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 231 accagcatggcaaacagcttgatcctatctcagagagagagagagagagagagagagaga 172
Query: 341 gagagagagagagacagttaattcaatatctttcagatgtggaaggatagctctggggga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gagagagagagagacagttaattcaatatctttcagatgtggaaggatagctctggggga 112
Query: 401 aagaaaacacaattcttacaaactccctctgaagtgttctgtcttgagaaccccatccag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aagaaaacacaattcttacaaactccctctgaagtgttctgtcttgagaaccccatccag 52
Query: 461 ataagatgtctgccagctgacccaagcttccacaaagaggagtgtcccctg 511
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 ataagatgtctgccagctgacccaagcttccacaaagaggagtgtcccctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_e19.g1 MSMg01no407_e19.g1 CHROMAT_FILE:
MSMg01no407_e19.g1 PHD_FILE: MSMg01no407_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:54 2005
(458 letters)
>mm_chr1_82943785_82944642
Length = 858
Score = 741 bits (383), Expect = 0.0
Identities = 438/459 (95%), Gaps = 7/459 (1%)
Strand = Plus / Plus
Query: 1 tcctttttttcccacatacaggccatgatctggcagctttgctcattcaggaaatctctg 60
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tccttttcttcccacatacaggccatgatctggcagctttgctcattcaggagatctctg 260
Query: 61 ccagggcatgctgcctcaccatgggcctgaagctgctgggcccaaccactgtgatggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ccagggcatgctgcctcaccatgggcctgaagctgctgggcccaaccactgtgatagctg 320
Query: 121 tgctctgcggtcagcttgcctgcgtttagatgagataggtttagattggcctgggagatg 180
||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tgctctgtggtcagcctgcctgcgtttagatgagatgggtttagattggcctgggagatg 380
Query: 181 gatgtgggaaactgggtaagtctgtggagctgtttgcagagaggtacaatcactctacat 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgcgggaaactgggtaagtctgtggagctgtttgcagagaggtacaatcactctacat 440
Query: 241 gtgagtggcacctacccaagggctc-ggagcccaatttgatcaaaagagaaaaagaagaa 299
||||||||||||||||||||||||| || ||||| || | | |||||||||||| |||||
Sbjct: 441 gtgagtggcacctacccaagggctcagg-gcccagttgggttaaaagagaaaaacaagaa 499
Query: 300 agaaagcagagtgtcgccagtgtcttttctttgtctgcctgattttaacgtgtgcctcct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaaagcagagtgtcgccagtgtcttttctttgtctgcctgattttaacgtgtgcctcct 559
Query: 360 tagtttattgaacaagtccagtcatgatgaattcaaacctacctgttctcataaggttta 419
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 560 tagtttattgaacaagtccagtcatgatgaattc-----tacctgtcctcataaggttta 614
Query: 420 tcattgctgtgatgaaataacatggcttacacttccatg 458
|||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 tcattgctgtgatgaaataacacggcttacacttccatg 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
