CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAAATGACACAAACTACCCCACTCCTATGAACACAGTAGGATGG
ATATGGTAGTTTCAGTAATAAATGTCCCCCCACAGCCGCAGGCACTTGAA
TAGTTGGTTCCCAATTGGTGGTAGTGTTCTGGGGGGTGGGGAGGTAGTAT
GGTTTTNNNNGNNTNNANTTANANGTNNTTTTTTTGTTGGGTTTATTATG
AGTTTGTGAGTGAGAATTTTGTGTTAGATATATTGTTTGATATTTTTGAT
GTTTAAGTCTTGGTTTTTTTTTTTTTTTTTTTAGTTGATTGGTTTGAGTG
ATTATTTGTTGTTTTTTTCTAATGGTAATATGAGTGTTTTAAGTTTATGT
TTTGAAGATTGATATTGTGTTATAATTGTTTAGTTGATTTATTTTTTTAT
AAGTTATTTGTTAGGTGTTATTGCTATTTATTTTATTGATTTTTTGTTTT
GTAATGATATATTTGTTATTGTTTTGATTATTTTTTAGCATTTCTTTGCT
CTATTTTTATTTACACTTTATTTGCTCCTACCTTTTTATTTTTTGTTCTC
CTTTATATATTTGCTTGTATACACGTATTTATTTTTCCTTTTTCTCCTTT
CACTTATTCTTCTTTTTCATATTTCCTTTTTTTTTTATTAACATATTTTT
ATTCTTTTTTTTTATTCGGCTGTTCCCTATTTTTTTTTTCTATTATCTTT
TCTCTATTTTTTTTATTTTTTCCTCTCCTCCTTTTTTCTCTTTCTCTCTC
TTCTTCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCCTGTATAGTGGGGAATGCT
TTGCATAGAGAATGTTTAAGATCTCCAGCCTTGTGCCAATTAGAATGAGT
TAGATACGCTACAGCATCAAACATTCCCAAATCCTAGAATGGATATAACA
CAAGTTTAATTTATTTTAGTTCACATGAGATCTTCTGTGGGTTCAGATGG
GCAGACTTTAGGGCAACTTTCCTCGTGTATTGATTCTGTATGATGATCAT
TCATAGCTCTCTATAAGCACATACCTCTGTGAATGCCACAGCGGAAGAAG
AACAATTAAGTGTGCCCCCCCCAGAAGTCACATGTGCCATATTTAAGTTG
CAAAAGTAAGTCTCCTGACCACACTGAACTCCAAGTCAGCGTGTCAGTTA
TCAACTCCTATAAAATAAAAAACAAATGACCAACCAAGTTACAGTTTTGA
CAACACAGTTTCTAATTTTGTATGACTTGTGAGTCAGAAGAGAGCTCTTT
CACAGGATTCCCCCCCACACACACACACACATACAGACAATGGTATCTGG
CTGGGGGATTAGTGGTTTGGTTGGCTCAAAAAGGCCCAATGTCCTTGTAT
GCATGTTGATCCCTGGGTGCCGAATGTTGACCGGTTGCCTGGTAACCTTG
AAGACTCCTTATCCTGCCGGAGTTTCTTTCTCCTCCTTAACAAAGGTC

Query= MSMg01no407_j05.g1 MSMg01no407_j05.g1 CHROMAT_FILE:
MSMg01no407_j05.g1 PHD_FILE: MSMg01no407_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:15 2005
         (528 letters)



>mm_chr1_158992583_158993514
          Length = 932

 Score =  975 bits (504), Expect = 0.0
 Identities = 524/534 (98%), Gaps = 8/534 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcctgtatagtggggaatgctttgcatagagaatgtttaagatctccagccttgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcttcctgtatagtggggaatgctttgcatagagaatgtttaagatctccagccttgtgc 673

                                                                       
Query: 61  caattagaatgagttagatacgctacagcatcaaacattcccaaatcctagaatggatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 caattagaatgagttagatacgctacagcatcaaacattcccaaatcctagaatggatat 613

                                                                       
Query: 121 aacacaagtttaatttattttagttcacatgagatcttctgtgggttcagatgggcagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aacacaagtttaatttattttagttcacatgagatcttctgtgggttcagatgggcagac 553

                                                                       
Query: 181 tttagggcaactttcctcgtgtattgattctgtatgatgatcattcatagctctctataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttagggcaactttcctcgtgtattgattctgtatgatgatcattcatagctctctataa 493

                                                                       
Query: 241 gcacatacctctgtgaatgccacagcggaagaagaacaattaagtgtg--ccccccccag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 492 gcacatacctctgtgaatgccacagcggaagaagaacaattaagtgtgccccccccccag 433

                                                                       
Query: 299 aagtcacatgtgccatatttaagttgcaaaagtaagtctcctgaccacactgaactccaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagtcacatgtgccatatttaagttgcaaaagtaagtctcctgaccacactgaactccaa 373

                                                                       
Query: 359 gtcagcgtgtcagttatcaactcctataaaataaaaaacaaatgaccaaccaagttacag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtcagcgtgtcagttatcaactcctataaaataaaaaacaaatgaccaaccaagttacag 313

                                                                       
Query: 419 ttttgacaacacagtttctaattttgtatgacttgtgagtcagaagagagctctttcaca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 312 ttttgacaacacagtttctaattttgtatgacttgtgagtcagaagagagctctttcgca 253

                                                                 
Query: 479 ggatt----cccccccacacacacacacacatacagacaatggtatctggctgg 528
           |||||    ||||||| |||||||||||||  ||||||||||||||||||||||
Sbjct: 252 ggattcccccccccccccacacacacacac--acagacaatggtatctggctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 932
Length adjustment: 10
Effective length of query: 518
Effective length of database: 922
Effective search space:   477596
Effective search space used:   477596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)