Query= MSMg01no407_j10.b1 MSMg01no407_j10.b1 CHROMAT_FILE:
MSMg01no407_j10.b1 PHD_FILE: MSMg01no407_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:16 2005
(524 letters)
>mm_chr1_101583024_101583947
Length = 924
Score = 739 bits (382), Expect = 0.0
Identities = 421/434 (97%), Gaps = 2/434 (0%)
Strand = Plus / Minus
Query: 5 gaattctcattgtataatcatattaatatccattaggacaaaatacataatcataaaaac 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gaattctcattgtataatcatattaatatccattagggcaaaatacataatcataaaaac 382
Query: 65 aaatccaaatttttaggaaaaaggaactgaaattattttccatgattgttattgttgttt 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatccaaattttaaggaaaaaggaactgaaattattttccatgattgttattgttgttt 322
Query: 125 tgtcaaacaaaaaggaatctatttttctgtgttatttttgcaaagtaaaatctgtatata 184
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 321 tgtcaaacaaaaaggaatctatttttccgtgttatttttgcagagtaaaatctgtatata 262
Query: 185 ccatactcagttaaatgaaaacaataagtagtatgaaattgttcagtggttaagcatgca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatactcagttaaatgaaaacaataagtagtatgaaattgttcagtggttaagcatgca 202
Query: 245 ggaactgatagagatccatggaagaagattcattactgctctgctttttgtggttggcca 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ggaactgatagagatccatggaagaagattcattactggtctgctttttgtggttggcca 142
Query: 305 agcgtactttcttataacaccaagaa-ccaccagcccagcagtgggactatacacactta 363
||| ||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 141 agcctactttcttataacaccaaaaaaccaccagcccagaagtgggactatacacactta 82
Query: 364 actggtcccttgcagataaattaataatcaagaaaatgccacacaaactttctgtgagga 423
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 81 actggtcccttgaagataaattaataatcaagaaaatgccgcacaaactttctgtgagga 22
Query: 424 aaat-gttttttca 436
||| |||||||||
Sbjct: 21 aaaaagttttttca 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_j10.g1 MSMg01no407_j10.g1 CHROMAT_FILE:
MSMg01no407_j10.g1 PHD_FILE: MSMg01no407_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:16 2005
(461 letters)
>mm_chr1_101408484_101409344
Length = 861
Score = 830 bits (429), Expect = 0.0
Identities = 453/461 (98%), Gaps = 1/461 (0%)
Strand = Plus / Plus
Query: 1 ctgattctctgacaatcctagagaactcattggcctcttagattctaacctttttaccca 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 202 ctgattctctgacaatcctagagaactcattggcctcttagactctaaccttttcaccca 261
Query: 61 tcagttcacttgggatgattgtcagcagctcttgcagatccactgaggaaaatgaataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 tcagttcacttgggatgattgtcagcagctcttgcagatccactgaggaaaattaataca 321
Query: 121 ttattttggaggcccaaaagaatgttccaggagctaacagcattgcaacccagaaatctg 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 ttattttggaggcccaaaagaatgttccaggagctaacag-attgcaacccagaaatctg 380
Query: 181 ctgacatagatgatggatttcccctcaggagaccagcttgagtctacaatatggttgaaa 240
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 381 ctgacatagatgatggatttcccctcaggagaccagcttgagactataatatggttgaaa 440
Query: 241 gggaccgtctctgagtctattgccaatctctaatggcaggtctcagggcagctgctagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaccgtctctgagtctattgccaatctctaatggcaggtctcagggcagctgctagcc 500
Query: 301 acatatttagctaaggtttatgatgtcgggcagaaagataatgaaggcccaccagaattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 acatatttagctaaggtttatgatgtcgggcagaaagataatgaaggcccagcagaattg 560
Query: 361 ctcgattgtattatgatcattatacccacctggaacctgagcaggaggagaattctaaca 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 ctcgattgtattatgatcattatacccacctagaacctgagcaggaggagaattctaaca 620
Query: 421 aagtatcactgacatttataaatcagtcagcaccagatatt 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtatcactgacatttataaatcagtcagcaccagatatt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
