Query= MSMg01no408_a05.b1 MSMg01no408_a05.b1 CHROMAT_FILE:
MSMg01no408_a05.b1 PHD_FILE: MSMg01no408_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:50 2005
(595 letters)
>mm_chr1_51887856_51888850
Length = 995
Score = 994 bits (514), Expect = 0.0
Identities = 576/610 (94%), Gaps = 23/610 (3%)
Strand = Plus / Plus
Query: 9 tccaaga-aaattacaaaggaagctctgagaaatgaacaggtgaactgccggacatagtc 67
||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 186 tccaagagaaaatagaaaggaagctctgagaaatgaacaggtgaactgccagacatagtc 245
Query: 68 aaaaaggacaagatgagaga---------------------a-agagagaaagagagaga 105
|||||||||||||||||||| | ||||||| |||||||||
Sbjct: 246 aaaaaggacaagatgagagagagagagagagagagagagagagagagagagagagagaga 305
Query: 106 gagagagatgagttacagctagattacagacccctgctgtaaggactacctcaccacacc 165
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 306 gagagagatgagttacagctagattacagacccctgctgtaagggctacctcaccacacc 365
Query: 166 agataaagacaacaagcaactaagccagcatgccacatgaaagtgtcttatgcttttaaa 225
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 366 agataaagacaacaagcaactaagccagcatgccacacgaaagtgtcttatgcttttaaa 425
Query: 226 gctacagaaataaataagcaagcgcatcaacaatagctcagtgttgttcaccaccactta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gctacagaaataaataagcaagcgcatcaacaatagctcagtgttgttcaccaccactta 485
Query: 286 cactggccatcctaaagagacaggatactgtggtagcttctaggaattaacttcgtcttg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 486 cactggccatcctaaagagacaggatactgtggtagcttctaggaattaactttgtcttg 545
Query: 346 tgtgaaagaattagaagaaacacataaagagcaagccatccccccacggcgactcttcag 405
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 546 tgtgaaagaattagaagaaacgcataaagagcaagccatccccccacgacgactcttcag 605
Query: 406 gttaaagctcccatattctaaacagccaagaaacaatgtctataagagagattggggtat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gttaaagctcccatattctaaacagccaagaaacaatgtctataagagagattggggtat 665
Query: 466 acgaagggaacaagagactccttagaatggctatgactaggactagggaaatcacaactg 525
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 666 acgaagggaacaagagactcctgagaatggctatgactaggactagggaaatcacagctg 725
Query: 526 gcggcttggactcgaggctccatgtgaacaaaaaggaaggaagaacaaccttgtatgcgg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gcggcttggactcgaggctccatgtgaacaaaaaggaaggaagaacaaccttgtatgcgg 785
Query: 586 tactttcccg 595
||||||||||
Sbjct: 786 tactttcccg 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_a05.g1 MSMg01no408_a05.g1 CHROMAT_FILE:
MSMg01no408_a05.g1 PHD_FILE: MSMg01no408_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:51 2005
(543 letters)
>mm_chr1_52078045_52078987
Length = 943
Score = 704 bits (364), Expect = 0.0
Identities = 379/384 (98%)
Strand = Plus / Minus
Query: 1 caaggtccatcctgacagtagagagcaagttacaaaaggcaggcagattgtttcacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaggtccatcctgacagtagagagcaagttacaaaaggcaggcagattgtttcacaaac 325
Query: 61 aatgcacagtttgcctcccatgtctatccactaaggcagatatccaggttagatgacaag 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgcatagtttgcctcccatgtctatccactaaggcagatatccaggttagatgacaag 265
Query: 121 aaacaggcagtttcgtgacattaagagaatttatagaggcctcattctttaagtaccaac 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 aaacaggcagtttcgtgacattaagagcatttatagaggcctcattctttaagtaccaac 205
Query: 181 atactgttggctacttttcttgttggtgcagagcaaaatgtctgaggaaaacaacttaag 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 atactgttggctacttttcttgttggtgcagagcaaaatatctgaggaaaacaacttaag 145
Query: 241 gaaggatttattgtggcttacatttggagcatacagtccatcacagtggggaaagcgtga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 144 gaaggatttattgtggcttacatttggagcatacagtccatcacagtggggaaatcgtga 85
Query: 301 cagcaagagcatgaagcacctggtcacatcagatgcaccattgagaagcagagagaaacc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 84 cagcaagagcatgaagcacctggtcacatcagatgcaacattgagaagcagagagaaacc 25
Query: 361 aatgtgagcactcagctttgattt 384
||||||||||||||||||||||||
Sbjct: 24 aatgtgagcactcagctttgattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
