TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCAGACTCTCCGCCAGGATTGAACTAGCACTGCCGCTCAGAGGC
CCAGGGGAAGTGCATGTAGTCTCACTGTTCATGGAACAGTTCATGCTGAA
ATGGACATGTCAGAAATTGTATTCCATGGGACAGAATTATTTTTAACCAT
TTTATGTGATGGCTATATTTATTTCTGTATTAGCTATACTAGATTGGGGA
AATTGTCATGCTTTATTCATATATAAAATTAAGTTTATAGCCAGTCTCAA
ATACTGTACCTTGGAGAGGAAAGCTCTGATTAATAACATGTTACCTTAAT
GGAGAGACAATTTTAATATGGTTTAAGATTTTAGCTAGAGACCATATTGT
ATATGCTATACATCTGTTTTCTGACTAGAGAACTTTTTTTTGAAAAGCAT
GAACTCAATAAAATGTTCTATTTTTCAAAATGACCATAAACTTAAAGCAG
CAATCAGTAAACACTCAGAAACGTGTGCTCATTCAGATGAGGAGGCCAGA
GTGCTTTCATTGCACATGTTAGATTCCCCCTATTGCACAAGGGTAGTTGT
GGTGATCTGTGATATACTAAGTGGTTTTATAAATAATATTATTTTAGTCT
TTGAAGAAGTCTTGCAAATTTGTGAAAATTAATCCCTCCCTCTCCCGCAA
TTCCTTCTGTAATTATTGATTCAACGGCCTCCTCTTTCTTTCCACCCAAA
TTTAN

GAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTGAGAAAGATGCACAAAGCCAT
GTCTGCTTAAGTCTCTGGAGCACAAAGGCTCTCAGTCTTCAGGGCTCTGC
TATTTGGAACCTACAGGAGACCTCTGTTGGGAGCCGCCCCCACATTCGCC
GTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATC
TGCGCATGTGCCAAGGGTATTTTACCACTACATGTACTCTGCCTTAACTC
GGCCATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGGAGAATA
ACTCTCCTAAATAGGGACGGGGGGTTTCGCTTTCGTTTAGAGGGGCGCTT
TCGTTTTTGGGGCTGGGGGTTTGCGCTCCTGGCTCCTGAAGATGTAAGCA
ATAAAGTTTTGCCGCAGAAGATTCTGGTTTGTTGTGTCTTTCCTGGCCGG
NCGTGAGAACGCGTATAAGAGTTGGTGCTGAAATCCGGGACGAGAAAATA
CAAGAAAACTCGGGACCGGCGCAAGGAAGATTCCTCATTCCGGAACCAGA
ACTGCGGGTCACGGTAATATAGGTTCCCGTAAAACAGATTGTTGAGAAAT
ATCAACTGCTTGAATTCAAAATTTTTCTTTTGGGGAAATGTTATTCCCCT
TAGTACCGCTTTTATACGGAATTCTGGTCTTTATCTTTTCCTAGTAAAGT
CACAAA

Query= MSMg01no408_b07.b1 MSMg01no408_b07.b1 CHROMAT_FILE:
MSMg01no408_b07.b1 PHD_FILE: MSMg01no408_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:56 2005
         (492 letters)



>mm_chr1_178716410_178717302
          Length = 893

 Score =  909 bits (470), Expect = 0.0
 Identities = 485/490 (98%), Gaps = 1/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcagactctccgccaggattgaactagcactgccgctcagaggcccagggga 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ggaattcctcagactcacagccaggattgaactagcactgccgctcagaggcccagggga 634

                                                                       
Query: 64  agtgcatgtagtctcactgttcatggaacagttcatgctgaaatggacatgtcagaaatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 agtgcatgtagtctcactgttcatggaacagttcatgctgaaatggacatgtcagaaatt 574

                                                                       
Query: 124 gtattccatgggacagaattatttttaaccattttatgtgatggctatatttatttctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtattccatgggacagaattatttttaaccattttatgtgatggctatatttatttctgt 514

                                                                       
Query: 184 attagctatactagattggggaaattgtcatgctttattcatatataaaattaagtttat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 attagctatactagattggggaaattgtcatgctttattcatatataaaattaagtttat 454

                                                                       
Query: 244 agccagtctcaaatactgtaccttggagaggaaagctctgattaataacatgttacctta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agccagtctcaaatactgtaccttggagaggaaagctctgattaataacatgttacctta 394

                                                                       
Query: 304 atggagagacaattttaatatggtttaagattttagctagagaccatattgtatatgcta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atggagagacaattttaatatggtttaagattttagctagagaccatattgtatatgcta 334

                                                                       
Query: 364 tacatctgttttctgactagagaactttttttt-gaaaagcatgaactcaataaaatgtt 422
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 333 tacatctgttttctgactagagaactttttttttgaaaagcatgaactcaataaaatgtt 274

                                                                       
Query: 423 ctatttttcaaaatgaccataaacttaaagcagcaatcagtaaacactcagaaacgtgtg 482
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgtttttcaaaatgaccataaacttaaagcagcaatcagtaaacactcagaaacgtgtg 214

                     
Query: 483 ctcattcaga 492
           ||| ||||||
Sbjct: 213 ctcgttcaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space:   425606
Effective search space used:   425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)