ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTTGTCCCATTTGGTATCTAACTTCTTGAGTTCCTTATAAATTTT
TTAAACTAACACTGTCAGATGTAGGGTTGGTAGACCTTTGTTCTCAATGT
GTAGGCTGCCATTATGGCCTATTGACAATGTCCTTTGCCTTACAGAAGCA
TTTCAGTTTTATGAGGTCCCATTTTTCAATTGTTAATCTCACTAAAGTGA
GATGGTAATTTTAAAGAATAAAATCCAGTACATACACAATTAGGTGCATC
CAGCTGTCTCAAACAATTTTTTATCATGAGCTTAAAAAGGTGACAAGTTA
CAGGAAGTCAATAAAATTCAGAGAAAACACTGAAAACAATCATTTTGCTC
AAGATCCTACATTCATTATTTAGAGACAAATAGACAATATCCAAATTAGA
GACAAAAATAAGGACATGCTATTAAATAAATCAAAATTTTGAGTAGAAAA
ATAAAATAGATGCGATAGCACAAATGTGGACATAGAACCAAAATATGAAG
CACTACAAGCAGTAGTTAGTGGTAGAACTACAGAGAGAACACCGGTCTTT
TGATACATAGTAACAACCACATAATTCAATGTATATCCATTGTAGTTTAA
AGTATAGAGAAGAGGCTAGAGATGAAGCCAGGTTGTTAGAATGCTTAGTT
GTATGCATTAAAGCTGTGGGTTCATTCCCTAGCAGTGCATAACCCTAGTG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAACTGAGGGTACTCAAAGGGATGAGGA
ACACCTAAAGAAATGTTCAACATTCTTAGTCATCAGGGAAATGTAAATCA
AAATATCCCTGTGATTTCACCTCACACCAGTCACAATGAATAAGATCAAA
AACTCAGGTAACAGTAGATACTGTTGAGGATGTGGGGAAAGAGGAACTCT
CTTCCGTCCTTGGTGGGATTGCAAGCCTGTACAACCACTCTGGAAATCAG
TTTGGCAGTTCTTCAGAAAATTGTGCATAGTACTAATTTAGGACCCAGCT
ATACTACTCCTTGGCATATATGTAGAAGATGCTCCAATATGCAATAAGGA
CATATGCTCCACTATGTTCATAGTGGCCTTATTTATAAGAACCAGAATCT
GAAAACAGCCCAGATGTCCCTCAAGAGAGGAATGGATACAGAAAATGTGG
TACATTTACACAATGGAATACTACTCAGATATTAAAAACAATGAATTCAT
GAAATTCTTAGGCAAATGGATGGAACTAGAAAATATCATCCCAAGTGAGG
TAACCTGATCACAAAAGAACATACATGGTATGCACTAACTGACAAGTGAA
TATTAGCTCAGAAGCTCAGATTACCCAAGATATAATTCACAGACCAAATG
AATCTCAAGAAGAAGGAAGACCAAATGGGGATACTTAAGGCCCTCTTT

Query= MSMg01no408_d11.b1 MSMg01no408_d11.b1 CHROMAT_FILE:
MSMg01no408_d11.b1 PHD_FILE: MSMg01no408_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:07 2005
         (635 letters)



>mm_chr1_50433574_50434609
          Length = 1036

 Score = 1129 bits (584), Expect = 0.0
 Identities = 619/638 (97%), Gaps = 13/638 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttgtcccatttggtatctaacttcttgagttccttataaattttttaaac 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgttggcatatttggtatctaacttcttgagttccttataaattttttaaac 264

                                                                       
Query: 65  taacactgtcagatgtagggttggtagacctttgttctcaatgtgtaggctgccattatg 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 taacactgtcagatgtagggttggtggacctttgttctcaatgtgtaggctgccattatg 324

                                                                       
Query: 125 gcctattgacaatgtcctttgccttacagaagcatttcagttttatgaggtcccattttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcctattgacaatgtcctttgccttacagaagcatttcagttttatgaggtcccattttt 384

                                                                       
Query: 185 caattgttaatctcactaaagtgagatggtaattttaaagaataaaatccagtacataca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caattgttaatctcactaaagtgagatggtaattttaaagaataaaatccagtacataca 444

                                                                       
Query: 245 caattaggtgcatccagctgtctcaaacaatttttta-------tcatgagcttaaaaag 297
           ||||||||||||||||||||||||||||||      |       ||||||||||||||||
Sbjct: 445 caattaggtgcatccagctgtctcaaacaa------aagagcaatcatgagcttaaaaag 498

                                                                       
Query: 298 gtgacaagttacaggaagtcaataaaattcagagaaaacactgaaaacaatcattttgct 357
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgacaagttacagaaagtcaataaaattcagagaaaacactgaaaacaatcattttgct 558

                                                                       
Query: 358 caagatcctacattcattatttagagacaaatagacaatatccaaattagagacaaaaat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caagatcctacattcattatttagagacaaatagacaatatccaaattagagacaaaaat 618

                                                                       
Query: 418 aaggacatgctattaaataaatcaaaattttgagtagaaaaataaaatagatgcgatagc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaggacatgctattaaataaatcaaaattttgagtagaaaaataaaatagatgcgatagc 678

                                                                       
Query: 478 acaaatgtggacatagaaccaaaatatgaagcactacaagcagtagttagtggtagaact 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 679 acaaatgtggacatagaaccaaaatatgaagcactacaagcagtagttagtggtaggact 738

                                                                       
Query: 538 acagagagaacaccggtcttttgatacatagtaacaaccacataattcaatgtatatcca 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acagagagaacaccggtcttttgatacatagtaacaaccacataattcaatgtatatcca 798

                                                 
Query: 598 ttgtagtttaaagtatagagaagaggctagagatgaag 635
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttgtagtttaaagtatagagaagaggctagagatgaag 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space:   641250
Effective search space used:   641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)