BAC Information

Click to search

BAC

Clone NameMSMg01-408G21
Chromosome1 (Build37)
Map Location 147,187,253 - 147,187,660
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs21, Rgs18, LOC667877, LOC625057, LOC383570
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408G21.T7 (MSMg01no408_g21.b1)MSMg01-408G21.TJ (MSMg01no408_g21.g1)
ACCAG506150AG506151
length785794
length of high quality
(start - end)		424 (41 - 464)406 (70 - 475)
definitionCHROMAT_FILE: MSMg01no408_g21.b1 PHD_FILE: MSMg01no408_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:24 2005CHROMAT_FILE: MSMg01no408_g21.g1 PHD_FILE: MSMg01no408_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATG
CTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTG
TTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTG
CATCCCTGGAATAAAACCTACTTGGTCAGGATAGATGATTGCTTTAATGT
GTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATA
TTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTG
TGGTTTAGGTATCAGAGTAATTGTGGCTTCATAAAATGAGTTGGGTAGAG
TACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGAATTAGA
TCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGGTCCTGG
GCTTTTTTTGTTTGGNAAACTATTAAAACTGCTTCTATTTCCTTAAGCGA
TATGGAACCGGTTAAATGTGCACCTTGTTCCTGATTCCACTTTGGTACTG
TGATTTGTTCCAAATTTTTTCTTTTCCCCCAGTTTTTCCCTTTTGCTAGA
ATAACCCTTTTTAAAAAAAATTAATTCATTTTTCATCTTTCTTCCCCTCT
TTTCTATTCCTCCCCTCCCCCTTTATTTTTTATCTTTTCGCTTTCCTTTT
TCCCCCTATTCATCCTTTCTTTTCCTTTCTCCCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCAGGTGCTTCTTGCTGATACAGCTAGTT
TCCAAGCTCTCTAAGTTAGAGCCTATTATAGAAATGTTTGTGTACACACT
GATTACCTACTCTACTTCTCTTCTAGCCAACTCCCAATGAAGCTGCCAAC
AGAGAGCACACAGCCACCTGAGCTTTGTGCTTCTTAAACTACTCATAGCT
AGCTAAATTCAGGGGAGAAATTGTCAACAATTCCTTCGTTCTTGTGGTAT
TTCATATTTCTATCATCAACTGTGTCCTAAACTAAGTGAATTAATTTAAC
AAGTAACAGTAATACTTTCTGGATTTCAATATTTTATATTATGTAGAAGG
TACAAATTATATTGTGTTGTGTTCTTTAGGATATTTTAATGCCTGGCTTA
AGAATTCAGCTCTACTTGACACTTTTTACTCAGTTCAGCCAAGAAATAGT
CTCAATGAGAAAAACACTGTTTACTAAATTGTCTCCCATTTGACAGGGNA
AAAAAAAAAAAATTCAACCTTTTAAGGGGGGGAAACGGATTCTTTTCTCC
GGGCCTTATGCAAACAAATAAAAACCCAAAGGCCCCACCCCGGGTTTGGA
ATATTAACTGGGTAAAAAAAAAAATATTTTTTTCCTTGTGAAAATTTGGC
ACGAAAAATAACCAAATTAAGAGAATCTGTTTTAAACCCCCCTTCTAAAA
AGACTTTTTATGGGGCCCAAAATTACTTTTTTAGTATTTCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_g21.g1 MSMg01no408_g21.g1 CHROMAT_FILE:
MSMg01no408_g21.g1 PHD_FILE: MSMg01no408_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:24 2005
         (406 letters)



>mm_chr1_147187053_147187860
          Length = 808

 Score =  762 bits (394), Expect = 0.0
 Identities = 404/408 (99%), Gaps = 2/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccaggtgcttcttgctgatacagctagtttccaagctctctaagttagagcctattat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tcccaggtgcttcttgctgatacagctagtttccaagatctctaagttagagcctattat 260

                                                                       
Query: 61  agaaatgtttgtgtacacactgattacctactctacttctcttctagccaactcccaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaatgtttgtgtacacactgattacctactctacttctcttctagccaactcccaatg 320

                                                                       
Query: 121 aagctgccaacagagagcacacagccacctgagctttgtgcttcttaaactactcatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctgccaacagagagcacacagccacctgagctttgtgcttcttaaactactcatagc 380

                                                                       
Query: 181 tagctaaattcaggggagaaattgtcaacaattccttcgttcttgtggtattt--catat 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 381 tagctaaattcaggggagaaattgtcaacaattccttcgttcttgtggtatttttcatat 440

                                                                       
Query: 239 ttctatcatcaactgtgtcctaaactaagtgaattaatttaacaagtaacagtaatactt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctatcatcaactgtgtcctaaactaagtgaattaatttaacaagtaacagtaatactt 500

                                                                       
Query: 299 tctggatttcaatattttatattatgtagaaggtacaaattatattgtgttgtgttcttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctggatttcaatattttatattatgtagaaggtacaaattatattgtgttgtgttcttt 560

                                                           
Query: 359 aggatattttaatgcctggcttaagaattcagctctacttgacacttt 406
           |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aggatattttaatgcctggcttaagagttcagctctacttgacacttt 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 808
Length adjustment: 9
Effective length of query: 397
Effective length of database: 799
Effective search space:   317203
Effective search space used:   317203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |