BAC Information

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BAC

Clone NameMSMg01-409E03
Chromosome1 (Build37)
Map Location 162,999,620 - 163,000,132
singlet/doubletsinglet
Overlap geneDars2
Upstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5
Downstream geneCenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409E03.T7 (MSMg01no409_e03.b1)MSMg01-409E03.TJ (MSMg01no409_e03.g1)
ACCAG506785AG506786
length795799
length of high quality
(start - end)		520 (42 - 561)175 (77 - 251)
definitionCHROMAT_FILE: MSMg01no409_e03.b1 PHD_FILE: MSMg01no409_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:33 2005CHROMAT_FILE: MSMg01no409_e03.g1 PHD_FILE: MSMg01no409_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAA
TTCCAGGTGAAGGTAGCTACGAGCTTCCGCCTGTTTTTGACAGCTTGTTT
CCCTGATTCTAACTGCATTTTAATACCAGGTCATTCATTCTCTTGATTAG
TTATAATTAAGGTCCCCCCCTTGATTATAAAAAAAAAAGTAGATAGCCTG
TGTAGTGTATACTATTAGTAGAAAAACTAAAGTAATAATTTAAATAAAAT
CTTTTCTAATAGTTTATTGATTTACAAATGATTGTTATAAACTATACTTG
TACTAAAGTTAAATACTAACTGCACTGTCAAGCAGGTAATTTCTAAAATT
ATATGTCACTTACCAAAATGGACAGCTACCATTTTATGTCCCTTCAAGTG
CTAGTTTATGTACAAGGTTTAGATTTCTAAACAGAAGGCAAAATTTTCCT
TTGGGGCAGTTATTTGCTTGGGCCTTGACACTTGTGCAGGTAAACACAAT
AGGGATATTGTATAATCTAGGCTATTTTATAAACTACATCAGACCTACAA
GATGGCTCAGTGGCTTCAGGCACTTCCTGCCAAGNCTGAGTACCAGAGTT
GACTCCCAAAACTCACACTGTGAATGGAATAAAAGAACAGAATCCACCAG
GTGTCCTCTGAATTCCAAAGGTGTACCGTGTTATGTGTTCCCCACTTCCG
GTGGGTACGCCTTCTTAATTCATATACGCTCTTTTTAATTACAAATTTTT
AAACTTTTCCCATTCGACCGTTTTGAATTTCAAAATTATGTGCGG

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTCATTTGGGCACTTTGGAGG
TAGAGCTAGAAGCACCGGGAGTCCAAAGTCATCCTTGTTGTGTTTTATAA
AAAGAAAGTGAAGCCAGGGATATGTTTGGTGAAGGCATGGTATGGTGTGG
GGGAAGGGCGTGCCTCTGTGGNCCCACGATGAGGCTTCTTTTCTCGCTGA
GGTACCTGATTTTTTACTGAGGCATAGCATAGAATAGAGCTTATTCATAG
CATGGGGTAGGCCAGTTGAGGTGGTGTTTTTTTTTTTTTGAGGCAAGGGA
GGAACACTCGCCCCGTTTTTTTTCGTTCTCGCCCCCCCCCCTGTGGCGGT
CTATTCTCTTTTCGTTTCTTTTCTCTTCTTTTTTTCTCCTCTTTAGCGTC
CCCCCCTCCTTCTCCTCCCGTTAGGTCCTAGTTTCCATTCTCTGTCCCTT
GTTTTTCTCTGCAACTGCCTTTCTAGTTGTTGTGTTAGTCAGCTTTTTTT
GCACTATCTCTACGATTCCTCGTCCCTCGTTCTCGGACTCTTACCAGCAC
TGCCTTCTCGTTTGCTACTTCTTGTATTCTATATCTTTTTTTCTTCCCTC
TCCTATCCCCTTCATAATTCTCACATCCTCTCTCCCCCTTAATCTCTTTC
TCTCGTTCACCTATTACTCCACCCAGCCGCACTTCTCTCCATCCTTTATT
CACTTTCCACCCCAGCTTCCGTCCTTGTCCTCCCGTCCTATCTTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_e03.b1 MSMg01no409_e03.b1 CHROMAT_FILE:
MSMg01no409_e03.b1 PHD_FILE: MSMg01no409_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:33 2005
         (520 letters)



>mm_chr1_162999414_163000332
          Length = 919

 Score =  971 bits (502), Expect = 0.0
 Identities = 511/514 (99%), Gaps = 1/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccaggtgaaggtagctacgagcttccgcctgtttttgacagcttgtttccctgat 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaattccaggtgaaggcagctacgagcttccgcctgtttttgacagcttgtttccctgat 660

                                                                       
Query: 67  tctaactgcattttaataccaggtcattcattctcttgattagttataattaaggtcccc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tctaactgcattttaataccaggtcattcattctcttgattagttataattaaggtcccc 600

                                                                       
Query: 127 cccttgattataaaaaaaaaagtagatagcctgtgtagtgtatactattagtagaaaaac 186
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cccttgattat-aaaaaaaaagtagatagcctgtgtagtgtatactattagtagaaaaac 541

                                                                       
Query: 187 taaagtaataatttaaataaaatcttttctaatagtttattgatttacaaatgattgtta 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taaagtaataatttaaataaaatcttttctaatagtttattgatttacaaatgattgtta 481

                                                                       
Query: 247 taaactatacttgtactaaagttaaatactaactgcactgtcaagcaggtaatttctaaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 taaactatacttgtactaaagttaaatactaactgcactgtcaagcaggtaatttctaaa 421

                                                                       
Query: 307 attatatgtcacttaccaaaatggacagctaccattttatgtcccttcaagtgctagttt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attatatgtcacttaccaaaatggacagctaccattttatgtcccttcaagtgctagttt 361

                                                                       
Query: 367 atgtacaaggtttagatttctaaacagaaggcaaaattttcctttggggcagttatttgc 426
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atgtacaaggtttagatttttaaacagaaggcaaaattttcctttggggcagttatttgc 301

                                                                       
Query: 427 ttgggccttgacacttgtgcaggtaaacacaatagggatattgtataatctaggctattt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttgggccttgacacttgtgcaggtaaacacaatagggatattgtataatctaggctattt 241

                                             
Query: 487 tataaactacatcagacctacaagatggctcagt 520
           ||||||||||||||||||||||||||||||||||
Sbjct: 240 tataaactacatcagacctacaagatggctcagt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space:   463590
Effective search space used:   463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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