Query= MSMg01no409_m04.b1 MSMg01no409_m04.b1 CHROMAT_FILE:
MSMg01no409_m04.b1 PHD_FILE: MSMg01no409_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:14 2005
(462 letters)
>mm_chr1_121803507_121804369
Length = 863
Score = 799 bits (413), Expect = 0.0
Identities = 443/453 (97%), Gaps = 2/453 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacttgtctcttactccccagttagaaccctggccttttttttttttaatgtgg 63
||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 ggaatccacttgtctctgactccccagttagaaccctggccttttttttttt-aatgtgg 263
Query: 64 gttttacagatcaaacttcagtcctcagcttacaaagcaaacactttagtgactgagcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttttacagatcaaacttcagtcctcagcttacaaagcaaacactttagtgactgagcta 323
Query: 124 tctcccagctccaaaaagtccttgtgacaccagagagtacagagacagcagagttctctg 183
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 324 tctcccagctccaaaaagtccttgtgacatcagagagtacagagacagcagaattctctg 383
Query: 184 gaaggtttcctgggctcgtggggaggaagtttcagagccacagtccccactggaggaagc 243
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 gaaggtttcctgggcccgtggggagggagtttcagagccacagtccccactggaggaagc 443
Query: 244 tgcttcagggggcactgtcaccgtgcccatgcacagctttgtgtgaatatggtgaa-gga 302
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 444 tgcttcagggggcactgtcaccgtgcccatgcacagctttatgtgaatatggtgactgga 503
Query: 303 tggatctaggcagttacagctgccagggaaatctgctcccactgcaggtttgaagaggct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggatctaggcagttacagctgccagggaaatctgctcccactgcaggtttgaagaggct 563
Query: 363 ttcatggcttccagacaaaaggttggccacaccccatgaatgcagggccagaagctggga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcatggcttccagacaaaaggttggccacaccccatgaatgcagggccagaagctggga 623
Query: 423 agccagaatctgtcaccttgagggtaaagttca 455
|||||||||||||||||||||||||||||||||
Sbjct: 624 agccagaatctgtcaccttgagggtaaagttca 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_m04.g1 MSMg01no409_m04.g1 CHROMAT_FILE:
MSMg01no409_m04.g1 PHD_FILE: MSMg01no409_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:14 2005
(472 letters)
>mm_chr1_121985850_121986721
Length = 872
Score = 857 bits (443), Expect = 0.0
Identities = 461/467 (98%)
Strand = Plus / Minus
Query: 6 aattcttaagtatttgtccctagtccttcacttccccccaaaagccaggtttaaaaatgg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aattcttaagtatttgtccctagtccttcacttccccccaaaagccaggtttaaaaatgg 613
Query: 66 aattttacagccatccccaaaatacaggaatttttaggccttgatattggtactgggtgt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aattttacagccatccccaaaatacaggaatttttaggccttgatattggtactgggtgt 553
Query: 126 ggaacccagggcctcacagatcttctcaaccagctggctctctcagttggcttgtctgtc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggaacccagggcctcacagatcttctcaaccagctggctctctcagttggcttgtctgtc 493
Query: 186 tctgtgccttccctggaggagagtcaaatcactgtcctttgtccccttctatatggggac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tctgtgccttccctggaggagagtcaaatcactgtcctttgtccccttctatatggggac 433
Query: 246 atcctacagggcccactgttttttcagacatgagctgtggcaagatggtgcacccctacc 305
|||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||
Sbjct: 432 atcctacagggcccactgttacctcagacaggagctgtggcaagatggtacacccctacc 373
Query: 306 atgtgaccttcaggaagtcgcttagcctgatggcttttcaaccttaagcagggagccagg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgtgaccttcaggaagtcgcttagcctgatggcttttcaaccttaagcagggagccagg 313
Query: 366 actgtgggtgaaatgacagtctatctctgtgcaggtgaataaggggactgagctgtggcc 425
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 312 actgtgggtgaaatgacagtctgtctctgtgcaggtgaataaggggactgagctgtggcc 253
Query: 426 ctgaggacaaacaagcatgtgaaaggagtaaccgaagatcctgtgca 472
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctgaggacaaacaagcatgtgaaaggagtaaccgaagatcctgtgca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
