Query= MSMg01no410_a13.b1 MSMg01no410_a13.b1 CHROMAT_FILE:
MSMg01no410_a13.b1 PHD_FILE: MSMg01no410_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:38 2005
(173 letters)
>mm_chr1_60739330_60739902
Length = 573
Score = 321 bits (166), Expect = 1e-92
Identities = 171/173 (98%)
Strand = Plus / Plus
Query: 1 ccttataaggagaagganagtttaacctggcttcaggcaatgtgtcctcctctggtgtgg 60
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ccttataaggagaaggaaagtttaacctggcttcaggcaatgtgacctcctctggtgtgg 260
Query: 61 caagggtaccccaggacatgcaggcccatggcaggaagccatcctacttctaatctcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagggtaccccaggacatgcaggcccatggcaggaagccatcctacttctaatctcaaa 320
Query: 121 atgagattttctgggtttggacatgcctcaggccctgtcttgctccaggcctg 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagattttctgggtttggacatgcctcaggccctgtcttgctccaggcctg 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space: 93225
Effective search space used: 93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no410_a13.g1 MSMg01no410_a13.g1 CHROMAT_FILE:
MSMg01no410_a13.g1 PHD_FILE: MSMg01no410_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:38 2005
(543 letters)
>mm_chr1_60894583_60895519
Length = 937
Score = 969 bits (501), Expect = 0.0
Identities = 530/544 (97%), Gaps = 8/544 (1%)
Strand = Plus / Minus
Query: 1 ataattaaattaatgaagtanatgaagggtagattggactgttctagacttgacctagta 60
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 737 ataattaaattaatgaagtaaatgaagggtaggttggactgttctagacttgacctagta 678
Query: 61 attaatgatttcactctcaccataataataattgagtttgccctcttattattgctacat 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 677 attaatgatttcactctcaccataataataattgagtttgccctctcattattgctacat 618
Query: 121 accaaaccagtatttccctgagtgtggatctaaccactcataatttta-atctaaccaca 179
|||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 617 accaaaccagtatttccctgagtgtggatctaaccactcataattttaga-------aca 565
Query: 180 cataattttcttgtctgcaaattatgcttcttaatgtagagacctttgacccagctgtag 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 cataattttcttgtctgcaaattatgcttcttaatgtagagacctttgacccagctatag 505
Query: 240 ctattatgtttgtctgcccctttctactacttataagttctttgaacttgaaatgaactt 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ctattatgtttgtctgcccctttctactatttataagttctttgaacttgaaatgaactt 445
Query: 300 tgagtttcaagcttattgtttccatgtttttcattatgaaaatgatatgagcctagaaca 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgactttcaagcttattgtttccatgtttttcattatgaaaatgatatgagcctagaaca 385
Query: 360 ttttatggaaccaaaaataatagtaataactcttcatagatatacatgatatctcttttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttatggaaccaaaaataatagtaataactcttcatagatatacatgatatctcttttg 325
Query: 420 agaaacagccttagtgagtgcccagagacacgatatttcctagctgtgttttctcgacac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaaacagccttagtgagtgcccagagacacgatatttcctagctgtgttttctcgacac 265
Query: 480 gttgatccattgcaggcattactacatctatgattctgttgctcttatcctatggtcttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttgatccattgcaggcattactacatctatgattctgttgctcttatcctatggtcttg 205
Query: 540 aaaa 543
||||
Sbjct: 204 aaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 937
Length adjustment: 10
Effective length of query: 533
Effective length of database: 927
Effective search space: 494091
Effective search space used: 494091
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
