BAC Information

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BAC

Clone NameMSMg01-410A15
Chromosome1 (Build37)
Map Location 120,755,528 - 120,755,730
singlet/doubletsinglet
Overlap geneGli2
Upstream geneLOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410A15.T7 (MSMg01no410_a15.b1)MSMg01-410A15.TJ (MSMg01no410_a15.g1)
ACCAG507382AG507383
length785801
length of high quality
(start - end)
240 (82 - 321)244 (79 - 322)
definitionCHROMAT_FILE: MSMg01no410_a15.b1 PHD_FILE: MSMg01no410_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:39 2005CHROMAT_FILE: MSMg01no410_a15.g1 PHD_FILE: MSMg01no410_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGACTTAACAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAAACGC
GNGGAATTCAGNCCAAGTACCTTACCCATCTAAACTCCACGGACTCAAGC
CCCCATCCTCCTCATGGGGGAGTCTCCATGGCGAGGCCACGGAGCTGGGG
ACTTAGAGGCCAGTGGCCCCATTTTTCAGTCATGTCCCGAGGGCAGAGAA
AGCCAAGGCCTGGGCTTTGAGTTCCCCAATTGAGGAAGTAGAATCGTATC
CTGGTCAACTCAAATTCACCAAAGGGCCTCTCTTCCCCAGCTCATTCCCA
GCCTGTGCTCAGCAGTCTGTGGTATTCTCTTTTGTTCTCCTCAGCCTCAG
TCTCCCCTCTGTGCCAGGCTGGGCCTGGATTCCTGCCTGAAGCAGTCCCC
TGAGACCCCAGCAATGTCTGCCTCTCCCCTGTGAGATCAATGCCATCGGT
TTCTGAGCCTCCCCACCCTGCATAAAGAATGAGCATCTCGATGGATGTGA
CATCCGAGGCACATTAGTGCCAATATGACCACCATACCCTCTGTTGCTAG
GAGCTACAGGCCTGCGACTCCACCGTTCTTCCATCCTCCACATTTCAATT
CCTCACTCTGATGCCATGCTTTCTCGTTCTTTTTCCCATCTTTCCATCTC
TGCTTACATTCCCTCCCCTCTTCTCTCCCCTCTTTTCCCCTTCTCTTCTC
CCTCTCTTTTTCCCTTCTCTCCCATTCTTCCCTTTCCCCTCATTATCCCT
CTTCCCTTCCTTTATCCCCCTTTTTTCTCTTTCTT
GACCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAAATTCCAAGCCAGCCAGGGCTACATAG
CAAAACCCTGTCTCAAAAGAAGCAAGGCAAAGACCAACCAAGAACTTGAC
TAGTGGCTAAAGAAACTTGGCATGACTGTAAAAACTTGTGCACATGTGCC
ATGGAACCCATAGATGACAGCTTACGGGGGTGTTGGTTCTTTCCTATCAA
GTGGATCCCAGGGATTGGATTTAGGTCTTCAGTCTTAGCCGCAAGCACCT
TTACACACTGAGCCACCTTGCAGGTTTTTTACATGACTTTAACAAAGCCA
AAGCCAGCATCAGGTCAGAGTTCCAGGTCATGTGTCTATAAACCCCGAGG
TCCGTGTCTGCTTTCTGTCCATAGATCTGGTTTTCCCCTACTTTGTAGCT
GACGAATCCTGTCTCATCATTTCCTCCGCCTTTGCCCCTTTCCTTGTACT
TCCCCTCCACCTTACTTTCTCTTTGCCCCCCTGACGTCTATACAGAGTCC
CCTCTTCCTTTTCCATTGATTCCTCTTTCCCTACTTCCCATTCATTCAAA
TCCCTACACCTTTCTTCATTTCCATTTTTACATCACCTATCTCCCCTTTC
ATCCTTTCCCCTTCCCTTTTTCCTTTCCTTATCCCTTTTACTCATTCCAC
TATACATCTCTAATCTTTTTCTCTTCTCTTCCCCCCTCCACTTTCTCTCT
TTTCTTCCTTCTTCCCTTATTCTTACTTTTATCTCCTCGTCTCCATACTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_a15.b1 MSMg01no410_a15.b1 CHROMAT_FILE:
MSMg01no410_a15.b1 PHD_FILE: MSMg01no410_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:39 2005
         (240 letters)



>mm_chr1_120755291_120755930
          Length = 640

 Score =  362 bits (187), Expect = e-104
 Identities = 199/203 (98%)
 Strand = Plus / Plus

                                                                       
Query: 38  ggagtctccatggcgaggccacggagctggggacttagaggccagtggccccatttttca 97
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 238 ggagcctccatggcgaggccacggagctggggacttagaggctagtggccccatttttca 297

                                                                       
Query: 98  gtcatgtcccgagggcagagaaagccaaggcctgggctttgagttccccaattgaggaag 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 298 gtcatgtcccgagggcagagaaagccaaggcctgggctttgagttccccaactgagtaag 357

                                                                       
Query: 158 tagaatcgtatcctggtcaactcaaattcaccaaagggcctctcttccccagctcattcc 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tagaatcgtatcctggtcaactcaaattcaccaaagggcctctcttccccagctcattcc 417

                                  
Query: 218 cagcctgtgctcagcagtctgtg 240
           |||||||||||||||||||||||
Sbjct: 418 cagcctgtgctcagcagtctgtg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)