BAC Information

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BAC

Clone NameMSMg01-410A16
Chromosome1 (Build37)
Map Location 111,411,102 - 111,468,260
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410A16.T7 (MSMg01no410_a16.b1)MSMg01-410A16.TJ (MSMg01no410_a16.g1)
ACCAG507384AG507385
length779746
length of high quality
(start - end)		433 (51 - 483)530 (78 - 607)
definitionCHROMAT_FILE: MSMg01no410_a16.b1 PHD_FILE: MSMg01no410_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:39 2005CHROMAT_FILE: MSMg01no410_a16.g1 PHD_FILE: MSMg01no410_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,467,831 - 111,468,260)(111,411,102 - 111,411,631)
sequence
NGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCACACATGTCACAAAGTTTCCAAACCATGAAACTTCAGC
AGGGTATAGATGTTGGAAGCCAAACTTGGTTATACCAGAATAGCAGATGT
ATTAACCAGTGAGAAATTCTTGCAAAACATGCAAATTAGAATGTGTTTAT
TCACTCCCTTGGCAATAGAAGTTTTGTTATTTCTAGTTAAGGCTGCTATA
AAAATATGTGTGGACTCATTGATGAAACATTTTATTTTCCTTTTTCAAAC
ACCTATATAGTATAAATGATATGTTTTGTAAAGCCAAGGTTATATTTTGT
AAAGTGAGGTGTGGTGGTGTTAGATGGGTTTCTTAGAAAGTCCATGCTGA
GGCTTCTCCCCATCCCCAATACCATGCCAGACATATGACAGGTCTAATGG
AGAACAGATTTCATTTTGGGATATGGGGAGGGTGGTGAAAATGTAGTATA
GTCATAGTGACGCTATATACCTTTCATCTTTCTCTTCCCCTCCCTTTCTT
CCCTTTCCTTTTTCCCCTTTCTTTCTTCTTTTTCCCCCCTCCTCCTTTTC
CTTCCTTTCCTCCCTCCCTCCCCTTACTTCTCTTTCCCTTCTCTTCATAT
TCTACCTTTTTCTCTCCCTCTTCTCTTCCTCTTTTACTTTATTCCCCTAT
CTTCTCTCTCTCTCTATTTCTCCCTTCCCTCACCCTTTTCTCCCCCCTTT
TCCCCTCTCTTTTTCCTCCCCTCTCTTAT

NNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTGGAGAATATCAGCAGCT
GGCATGATAATGAGTCCACTCCATTGCAAATGAATTCATTGTTATTCCAT
CCCCGCTGTCTTCCATTCACAGTTGCATGGCATCTATACATAAATAAAAA
ATAGGTATTGTGCATAGCTGAGCTCAAGTGATCTGTAAGAACTGTATTTG
CAAACAAAAGAAAAGAGTAGGAAATAAAAGCAAATGAAGCTACCAGATGA
GGAAGGAGAAAACAGTCAGGTGCTTTACAAAGAACTGGAAGATAAGAAAA
TCAATTTTAAAATGAGAGCAATGCATACTAATAGTCACTTTTGCAACAGT
CAGTCTTCTTTGTCTTATTATTTCATCACTTAAGTGAAAGATTATGTAAT
TTTTCAAGAAGCATACAGTTAATATATTTTCACAATAATACAGCAAAAAT
AAGTCCATTCATGCTTATTAGTAAATTATTAGTTACTCCTTTGGTTGGAA
TTAATAAGTTTCTGTTAAAATGGATTTCCTGACTTAAGGTGGACCACAGC
TTGGAATAGAGCAGATGATGAGGAATCTTGAATCAGATAGCACTGAAATG
ACTCAAATAAGACTGGAGATGGAATAGCTAATAACAAAAGCAAAATATCC
ATCAAGTTTTACAAATGGAAACGACTGAAATATAAGTTAAACAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_a16.b1 MSMg01no410_a16.b1 CHROMAT_FILE:
MSMg01no410_a16.b1 PHD_FILE: MSMg01no410_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:39 2005
         (433 letters)



>mm_chr1_111467776_111468608
          Length = 833

 Score =  808 bits (418), Expect = 0.0
 Identities = 427/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccacacatgtcacaaagtttccaaaccatgaaacttcagcagggtatagatgt 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 485 ggaattcccacacatgtcagaaagtttccaaaccatgaaacttcagcagggtatagatgg 426

                                                                       
Query: 64  tggaagccaaacttggttataccagaatagcagatgtattaaccagtgagaaattcttgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tggaagccaaacttggttataccagaatagcagatgtattaaccagtgagaaattcttgc 366

                                                                       
Query: 124 aaaacatgcaaattagaatgtgtttattcactcccttggcaatagaagttttgttatttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaacatgcaaattagaatgtgtttattcactcccttggcaatagaagttttgttatttc 306

                                                                       
Query: 184 tagttaaggctgctataaaaatatgtgtggactcattgatgaaacattttattttccttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tagttaaggctgctataaaaatatgtgtggactcattgatgaaacattttattttccttt 246

                                                                       
Query: 244 ttcaaacacctatatagtataaatgatatgttttgtaaagccaaggttatattttgtaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttcaaacacctatatagtataaatgatatgttttgtaaagccaaggttatattttgtaaa 186

                                                                       
Query: 304 gtgaggtgtggtggtgttagatgggtttcttagaaagtccatgctgaggcttctccccat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtgaggtgtggtggtgttagatgggtttcttagaaagtccatgctgaggcttctccccat 126

                                                                       
Query: 364 ccccaataccatgccagacatatgacaggtctaatggagaacagatttcattttgggata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ccccaataccatgccagacatatgacaggtctaatggagaacagatttcattttgggata 66

                     
Query: 424 tggggagggt 433
           ||| ||||||
Sbjct: 65  tggagagggt 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no410_a16.g1 MSMg01no410_a16.g1 CHROMAT_FILE:
MSMg01no410_a16.g1 PHD_FILE: MSMg01no410_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:39 2005
         (530 letters)



>mm_chr1_111410902_111411831
          Length = 930

 Score =  971 bits (502), Expect = 0.0
 Identities = 523/530 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggctggagaatatcagcagctggcatgataatgagtccactccattgcaaatgaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctggagaatatcagcagctggcatgataatgagtccactccattgcaaatgaattc 260

                                                                       
Query: 61  attgttattccatccccgctgtcttccattcacagttgcatggcatctatacataaataa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attattattccatccccgctgtcttccattcacagttgcatggcatctatacataaataa 320

                                                                       
Query: 121 aaaataggtattgtgcatagctgagctcaagtgatctgtaagaactgtatttgcaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaaataggtattgtgcatagctgagctcaagtgatctgtaagaactgtatttgaaaacaa 380

                                                                       
Query: 181 aagaaaagagtaggaaataaaagcaaatgaagctaccagatgaggaaggagaaaacagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaaagagtaggaaataaaagcaaatgaagctaccagatgaggaaggagaaaacagtc 440

                                                                       
Query: 241 aggtgctttacaaagaactggaagataagaaaatcaattttaaaatgagagcaatgcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgctttacaaagaactggaagataagaaaatcaattttaaaatgagagcaatgcata 500

                                                                       
Query: 301 ctaatagtcacttttgcaacagtcagtcttctttgtcttattatttcatcacttaagtga 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ctaatagtcacttttgcaacagtcagtcttctttgtcttattatttcaccacttaagtga 560

                                                                       
Query: 361 aagattatgtaatttttcaagaagcatacagttaatatattttcacaataatacagcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagattatgtaatttttcaagaagcatacagttaatatattttcacaataatacagcaaa 620

                                                                       
Query: 421 aataagtccattcatgcttattagtaaattattagttactcctttggttggaattaataa 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 aataagtccattcatgcttattagtaaattattagttactcctttagttggaattaataa 680

                                                             
Query: 481 gtttctgttaaaatggatttcctgacttaaggtggaccacagcttggaat 530
           ||||||||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct: 681 gtttctgttaaaatggatttcctgatttaagatggaccacagtttggaat 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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