Query= MSMg01no410_n04.b1 MSMg01no410_n04.b1 CHROMAT_FILE:
MSMg01no410_n04.b1 PHD_FILE: MSMg01no410_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:40 2005
(488 letters)
>mm_chr1_4738263_4739150
Length = 888
Score = 841 bits (435), Expect = 0.0
Identities = 475/493 (96%), Gaps = 9/493 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctttattttacatgtagagcttggggtccactcacaggggaaccatgtatatc 63
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 553 ggaattcctttatcttaaatgtagagcttggggtccactcacaggggagccatgtatatc 494
Query: 64 aaaaagtcaagggaaaatactttttaacttttaggatttgacgttgaaatgcctgacaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaaagtcaagggaaaatactttttaacttttaggatttgacgttgaaatgcctgacaaa 434
Query: 124 ggcttatgttacgggcttcacggtcagcggactgcgctgtggaactgttagctatgaggc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggcttatgttacgggcttcacggtcagcggactgcgctgtggaactgttagctatgaggc 374
Query: 184 tctggttgagtcagtgaggaggctcactgatggattgaagtggtgaagaatgggccctag 243
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||
Sbjct: 373 tctggttgagtcagtgaggaggctcactggtggattgaagtggtgaagagtgggcccgag 314
Query: 244 ctggaaggagcaggcccctgagtgtttgctctataactgtagaaatgtatgtcctctact 303
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 313 ctggaaggagcaggccactgagtgtttgctctagaactgtagaaatgtatgtcctatact 254
Query: 304 gaacccatttcttggtcattctgcttcccagctcaatgcagtatgtgact--------tt 355
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 253 gaacccatttcttggtcattctgcttcccagctcaatgcagtatgtgactatgtgacttt 194
Query: 356 gttccatcactgtttctgtgatattcagccttttctcaggccaagctgtgaaaccaaact 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gttccatcactgtttctgtgatattcagccttttctcaggccaagctgtgaaaccaaact 134
Query: 416 gccatgaagtgaggccacgaaaccacaagccacaaagaaatgcctcctccttctgtcgct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gccatgaagtgaggccacgaaaccacaagccacaaagaaatgcctcctccttctgtcgct 74
Query: 476 ttttatttcttag 488
||| |||||||||
Sbjct: 73 ttt-atttcttag 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_n04.g1 MSMg01no410_n04.g1 CHROMAT_FILE:
MSMg01no410_n04.g1 PHD_FILE: MSMg01no410_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:40 2005
(555 letters)
>mm_chr1_4546265_4547219
Length = 955
Score = 992 bits (513), Expect = 0.0
Identities = 548/567 (96%), Gaps = 12/567 (2%)
Strand = Plus / Plus
Query: 1 tctgttttgctctgttccccattttctaatagggttattttgttctctggagtctaactt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgttttgctctgttccccatcttctaatagggttattttgttctctggagtctaactt 260
Query: 61 cttgagttctttgtatatattggatattagccttctatcagatataggattggtaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttgtatatattggatattagccttctatcagatataggattggtaaagat 320
Query: 121 ctttttccaataaaattacttctttaaatattgaatttgagaaacatttagaaatctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttccaataaaattacttctttaaatattgaatttgagaaacatttagaaatctttt 380
Query: 181 gttgctgttgttggtggtggtgtatttttgaaataggtctcactatgtagctctggccat 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgctgttgttgttggtggtgtatttttgaaataggtctcactatgtagctctggccat 440
Query: 241 tctcactatgtagaccaggctggcatcgaactcaaagagatcctcctgacactgcctccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcactatgtagaccaggctggcatcgaactcaaagagatcctcctgacactgcctccc 500
Query: 301 aagtgtttgaattaaggtatatgccacaacacctggctaatctttatgattcttccaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgtttgaattaaggtatatgccacaacacctggctaatctttatgattcttccaaaa 560
Query: 361 aagttttacatacaatttatcagtctaaatttaaacttgagattcctgtttcagtctctt 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 aagttttacatacaatttatcagtctgaatttaaacttgagattcctgtttcagtctctt 620
Query: 421 aaatgcaggaatctcatgaccctctaagcatttataaacactatacaaaagcatcacttg 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 aaatgcaggaatctcatgaccctctaagcgtttataaacactatacaaaagcatcacttg 680
Query: 481 tacttgaacaaggcagtttgattaattgcctttaaatattttcagatttactgtgtgtg- 539
||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||
Sbjct: 681 tacttgaacaaggcagtttgattaattacctttaaatattttcagatttagtgtgcgtgc 740
Query: 540 -----------tgtgtgtgtgtgtgtg 555
||||||||||||||||
Sbjct: 741 gcgcgcgcacgtgtgtgtgtgtgtgtg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
