Query= MSMg01no410_o04.b1 MSMg01no410_o04.b1 CHROMAT_FILE:
MSMg01no410_o04.b1 PHD_FILE: MSMg01no410_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:45 2005
(590 letters)
>mm_chr1_121729912_121730901
Length = 990
Score = 1096 bits (567), Expect = 0.0
Identities = 585/591 (98%), Gaps = 2/591 (0%)
Strand = Plus / Plus
Query: 1 caaatggcacaaggctgacatacaagtgaactaataaacacacattaagagtatatttga 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatggcacaaggttgacatacaagtgaactaataaacacacattaagagtatatttga 260
Query: 61 tagttcagtgaaataacttttttatatgtacactgtctggaactcaacagataatactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttcagtgaaataacttttttatatgtacactgtctggaactcaacagataatactaa 320
Query: 121 cagtcttcccc-tctggatcttctttctgtctagtactccacagaacctcctgtgagaag 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtcttccccctctggatcttctttctgtctagtactccacagaacctcctgtgagaag 380
Query: 180 acagaaataagctagcctcccaaattaatgccttcctcttaagcattcagttcttaccaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaaataagctagcctcccaaattaatgccttcctcttaagcattcagttcttaccaa 440
Query: 240 tttcttcaaatatttatacctttcttccactgtttctaccagggaataatgaaataaaaa 299
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttcaaatactcatacctttctttcactgtttctaccagggaataatgaaataaaa- 499
Query: 300 gataacagtgaatataataaacatcccttatattttatgactacacctaattctcattca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gataacagtgaatataataaacatcccttatattttatgactacacctaattctcattca 559
Query: 360 aaggctataaaataaatttctagacaactgttctcctatgccagtaaagaatattctata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaggctataaaataaatttctagacaactgttctcctatgccagtaaagaatattctata 619
Query: 420 ttacttcttcattatgttccttctcactatctgtgctaattgaacactacatgaaacata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttacttcttcattatgttccttctcactatctgtgctaattgaacactacatgaaacata 679
Query: 480 ccaatgtttctctacagtactttactggcctcttcccctcaaaaaaatccaacttccaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccaatgtttctctacagtactttactggcctcttcccctcaaaaaaatccaacttccaga 739
Query: 540 aattaatctttaaggcttctactgagccagtaaatttaacatttttgaact 590
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aattaatctttaaggcttctactgagccagtaaatttaacatttttgaact 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_o04.g1 MSMg01no410_o04.g1 CHROMAT_FILE:
MSMg01no410_o04.g1 PHD_FILE: MSMg01no410_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:45 2005
(452 letters)
>mm_chr1_121907519_121908370
Length = 852
Score = 851 bits (440), Expect = 0.0
Identities = 449/452 (99%)
Strand = Plus / Minus
Query: 1 aaatagacaggtcacatgagcatgtctctgagagcagagggtgaggggagcaaggtggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aaatagacaggtcacatgagcatgtctctgagagcagagggtgaggggagcaaggtggaa 593
Query: 61 ggttccagagagagtcctggggttaactgaggttatgaggccaggttcccatcctaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggttccagagagagtcctggggttaactgaggttatgaggccaggttcccatcctaacag 533
Query: 121 actcatgttcctataagggacaggatggtctgggctgcaggcacgactgactaggcctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 actcatgttcctataagggacaggatggtctgggctgcaggcacgactgactaggcctac 473
Query: 181 ctatccccattagtgttgagagtgttatgtcagagtggtctgttgaagccagcagcccca 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctatccccattagtgttcagagtgttatgtcagagtggtctgttgaagccagcagcccca 413
Query: 241 ggatcgtctcactttttcaggtttacccagtgctgagctgccttgtatttattgtaagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggatcgtctcactttttcaggtttacccagtgctgagctgccttgtatttattgtaagca 353
Query: 301 agtacaggtagataggatcttagtgttgtgagtttgccttgggtaccccagagccgggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 352 agtacaggtagataggatcttagtgttgtgagtttgccttgggtaccccagagccaggtg 293
Query: 361 aaggtcagtgtccttaacactgcacggagactggggcccagtgatgagacactggaaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaggtcagtgtccttaacactgcacggagactggggcccagtgatgagacactggaaggg 233
Query: 421 gccaccacagcggcagaacggcaggccgctaa 452
|||||||||||||||||||||||| |||||||
Sbjct: 232 gccaccacagcggcagaacggcagaccgctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
