GGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTTACCAATACCGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTACTCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCATTCAGAATGGCTAAGATAAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTTGACATAGTACTATTGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCTTGAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAGGATATCCAAGATATAAGATACAATTTCCTAAACACATGAAACT
CAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGACGTG

CGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGAAAAACACAAAGGAGTTTAGCA
ATTAGTGCTAACTATGAGATTCATTCCAGAAAATGAAATACAGCAATTTG
TTGTGTTTATCTCCTATAATTATGAGACTAAATGTGAGCAGTAGCTCATT
AATGAAACTGTAAATTTCAAAACAGAGCCTCAAACTGCTGTGGAGCTCAA
TAATATCCCATAAAACTGTGATTAATATATTGATATAAAGTTGTATATTT
CAATAAATCATTCATTGTACTGTCAAATAAATGTCTAGAATTGGCTATTA
CATTTTTAAAAGCTCAAGTCAACTGAGTTAACTGAGATATAATTTCACTA
ATATGGCTTTATTTTGAAATAGCCTGATAAAGTTCAAAGTTTTAACAGGG
ATATTAACGAGAAGATGAAAATAATGTTTATCTGGGGAGGTAATAGAACA
TAAAAACAATCTTGATTATACATATGCATTGTGGTAAATGTTTTTTCTAA
TTGCATTAAATTTTAGAGATCGTTCAGTGAGTAAAGTTGAATCATTTGAT
AGAATTTAATTAATGGCTTTAGAATAGCATAATTGCTATTTTCTTGAAAT
ATTTGATGTATTGATATTTCATGGCTTGCTGAACTCTGTGATAGCAGAGT
AGTTACTGTACTACAGAATACAATTTATATTATTAATTTG

Query= MSMg01no411_a05.g1 MSMg01no411_a05.g1 CHROMAT_FILE:
MSMg01no411_a05.g1 PHD_FILE: MSMg01no411_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:55 2005
         (557 letters)



>mm_chr1_148552443_148553399
          Length = 957

 Score = 1031 bits (533), Expect = 0.0
 Identities = 551/557 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaaaacacaaaggagtttagcaattagtgctaactatgagattcattccagaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaaaacacaaaggagtttagcaattagtgctaactatgagattcattccagaaaatg 260

                                                                       
Query: 61  aaatacagcaatttgttgtgtttatctcctataattatgagactaaatgtgagcagtagc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatacagcaatttgttgtatttatctcctataattatgagactaaatgtgagcagtagc 320

                                                                       
Query: 121 tcattaatgaaactgtaaatttcaaaacagagcctcaaactgctgtggagctcaataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattaatgaaactgtaaatttcaaaacagagcctcaaactgctgtggagctcaataata 380

                                                                       
Query: 181 tcccataaaactgtgattaatatattgatataaagttgtatatttcaataaatcattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccataaaactgtgattaatatattgatataaagttgtatatttcaataaatcattcat 440

                                                                       
Query: 241 tgtactgtcaaataaatgtctagaattggctattacatttttaaaagctcaagtcaactg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtactgtcaaatgaatgtctagaattggctattacatttttaaaagctcaagtcaactg 500

                                                                       
Query: 301 agttaactgagatataatttcactaatatggctttattttgaaatagcctgataaagttc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttaaccgagatataatttcactaatatggctttattttgaaatagcctgataaagttc 560

                                                                       
Query: 361 aaagttttaacagggatattaacgagaagatgaaaataatgtttatctggggaggtaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagttttaacagggatattaacgagaagatgaaaataatgtttatctggggaggtaata 620

                                                                       
Query: 421 gaacataaaaacaatcttgattatacatatgcattgtggtaaatgttttttctaattgca 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 gaacataaaaacaatcttgattatacatatacattgtggtaaatgttttttctaattgca 680

                                                                       
Query: 481 ttaaattttagagatcgttcagtgagtaaagttgaatcatttgatagaatttaattaatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaattttagagatcgttcagtgagtaaagttgaatcatttgatagaatttaattaatg 740

                            
Query: 541 gctttagaatagcataa 557
           | |||||||||| ||||
Sbjct: 741 gttttagaatagtataa 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)