ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTGTGCCAAATCGAATGGCTGAGAAGCACCTGAAAAAATGTTCA
ATATCCTTAATCATCAGGGAAATGCAATCAAAACAACCCTGAGATTCCAC
CTCACAACAGTCAGAATGGCTAATATCAAAAATTCATGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAA
TTGGACATAATACTACCTGAGGATCCAGCAATACTTCTCCTGGGCATATA
TCCAGAATATGTTCCAACTGGCAATAAGAACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTTCC
TCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA
CTAGTCAGCTATTAAAAACAATGAATTTATGAAATTCCTAGGCAAATGGA
TGGATCTGGAGGGTATCATCCTGAGTGTGGTAACCCAATCACAAAAGAAG
TCACATGACATGCACTCACTGATAAGTGGATATTAACCCAGAATCTTAAA
TACCTAAGATACNATTTGCCAAACACATGAAACTCAAGAAGAACAACACC
AAAGTGTGGACACCTCGCCCCTCTCTAGACTTGGGAACAAAAACCCCTGG
GAAGGAGTTACCGAAACACAATTTGGN

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTATATACTTGGCACGTTTTTTTGTTTT
TTTTTTGTTTGTTTGTTTAAGACAGGGTCTTTTACTGAACAGTGAGTTCA
CAGGGTTGGTGGCTAGACTGGTTAGCCAGGGAGATCCAGGAATCACCTCC
TAGACCCCCATCATACTGGATTACAGATCATAGTGCTGGGCCCCGTATTT
TACCTGGGTATTGCAGTACTTAGGTCCTCATACTTATGTGGCAAGCACTT
TACCTATTGAGCCATTTCCCCGTCTCTTCCTTTCTTGCATGTTCAAGTTT
CCCTCTTCCTCTCTTCCTCATCACCCCCCACTCCTTTTTCCCAACCAATC
CTATTGGTTCCTGAATGCTGGAATTTCAAGTGTGAGCCACTATGTCCTAT
TTAAATGACATTTAATTTGTATGTTTAGTAGTCATAAGCATTTGTGATAA
GAATGTTTTTAGTTTTCCCTAAAATCCTTAAAAATATACAGGGGCTAGGA
ATATAGCTCAGAAGGGATAGTGCTTGCCTAATGTGGCAGAAAGTCCTGGG
CTCAAGGCGTAACCAGTCATGGTGACATGTCTGTAAACGCAGCACTTAAG
ATGTCGGTGCAGGAGGCCCCCCTTACCTATACCTAAGGCTCCTGGTTCTT
GTGGCCCATGTGAGCACCTTGTCTTACAAAGTATTTTTATACATGGGGAT
ATCCTTTCCATTCCCTAN

Query= MSMg01no411_h20.g1 MSMg01no411_h20.g1 CHROMAT_FILE:
MSMg01no411_h20.g1 PHD_FILE: MSMg01no411_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:33 2005
         (488 letters)



>mm_chr1_33853138_33854027
          Length = 890

 Score =  839 bits (434), Expect = 0.0
 Identities = 438/440 (99%), Gaps = 2/440 (0%)
 Strand = Plus / Minus

                                                                       
Query: 51  acagggtcttttactgaacagtgagttcacagggttggtggctagactggttagccaggg 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 acagggtcttttactgaacagtgagttcacagggttggtggctagactggttagccaggg 831

                                                                       
Query: 111 agatccaggaatcacctcctagacccccatcatactggattacagatcatagtgctgggc 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 agatccaggaatcacctcctagacccccatcatactggattacagatcatagtgctgggc 771

                                                                       
Query: 171 cccgtattttacctgggtattgcagtacttaggtcctcatacttatgtggcaagcacttt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cccgtattttacctgggtattgcagtacttaggtcctcatacttatgtggcaagcacttt 711

                                                                       
Query: 231 acctattgagccatttccccgtctcttcctttcttgcatgttcaagtttccctcttcctc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 acctattgagccatttccccgtctcttcctttcttgcatgttcaagtttccctcttcctc 651

                                                                       
Query: 291 tcttcctcatcacc--ccccactcctttttcccaaccaatcctattggttcctgaatgct 348
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcttcctcatcacctcccccactcctttttcccaaccaatcctattggttcctgaatgct 591

                                                                       
Query: 349 ggaatttcaagtgtgagccactatgtcctatttaaatgacatttaatttgtatgtttagt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ggaatttcaagtgtgagccactatgtcctatttaaatgacatttaatttgtatgtttagt 531

                                                                       
Query: 409 agtcataagcatttgtgataagaatgtttttagttttccctaaaatccttaaaaatatac 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agtcataagcatttgtgataagaatgtttttagttttccctaaaatccttaaaaatatac 471

                               
Query: 469 aggggctaggaatatagctc 488
           ||||||||||||||||||||
Sbjct: 470 aggggctaggaatatagctc 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 890
Length adjustment: 10
Effective length of query: 478
Effective length of database: 880
Effective search space:   420640
Effective search space used:   420640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)