Query= MSMg01no411_n17.b1 MSMg01no411_n17.b1 CHROMAT_FILE:
MSMg01no411_n17.b1 PHD_FILE: MSMg01no411_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:02 2005
(419 letters)
>mm_chr1_107307081_107307896
Length = 816
Score = 609 bits (315), Expect = e-178
Identities = 376/399 (94%), Gaps = 7/399 (1%)
Strand = Plus / Minus
Query: 5 gaattctgaaagtg--ccgacttttaaagccattgatgattgatcatcatagttctatca 62
|||||||||||| | | ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 581 gaattctgaaagaggtc--acttttaaagccattgacgattgattgtcatagttctatca 524
Query: 63 ttacacaaaagtttgctcagctgttccctgacatcagtgacagctacctagtcacttctt 122
|||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||
Sbjct: 523 ttacacaaaagtttgctcagttgttccgtgacatcagtgacagctacctagttacttctt 464
Query: 123 agttcctcacagttaggacctgtttaaatacccaggatttcaccaattggattcccattg 182
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 463 agttcctcacagttagggcctgcttaaatacccaggatttcaccaattggattcccattg 404
Query: 183 tgcacatttatgcatctgctgtatgccctgttagttggcaatagtatatgactttcatca 242
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 403 tgcacatttatgcatctgctgtataccctgttagttggcaatagtatgtgactttcatca 344
Query: 243 caaacatgatgtctaccacgattttctcttctgctttgtgagtaacatttggtgattgat 302
|||||||| |||||||| || |||||||||||| |||||||||||||||||||||| |
Sbjct: 343 caaacatg---tctaccacaatcttctcttctgctctgtgagtaacatttggtgattgtt 287
Query: 303 tgctgcattcacactgatttaggaactgcccagtgggttcctataattcaatcattcctt 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 286 tgctgcattcacactgatttaggaactgcccagtgggttgctataattcaatcattcctt 227
Query: 363 ctttatttactactttggttttttgttgttgttgttttt 401
|||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ctttatttactactttggttttttgttgttgttgttttt 188
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 816
Length adjustment: 9
Effective length of query: 410
Effective length of database: 807
Effective search space: 330870
Effective search space used: 330870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_n17.g1 MSMg01no411_n17.g1 CHROMAT_FILE:
MSMg01no411_n17.g1 PHD_FILE: MSMg01no411_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:03 2005
(505 letters)
>mm_chr1_107162821_107163725
Length = 905
Score = 803 bits (415), Expect = 0.0
Identities = 467/501 (93%), Gaps = 27/501 (5%)
Strand = Plus / Plus
Query: 1 taagcactttcacctatgcagaaaacaatggggaagacaaaatgagagcttacaattttt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 taagcactttcacctatgcagaaaacaatggggaagacaaaacgagagcttacaattttt 260
Query: 61 tttcatttatttaacaattatcatttaactgactgtttttgtcagcaagagttctgtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcatttatttaacaattatcatttaactgactgtttttgtcagcaagagttctgtgtt 320
Query: 121 tgtaacacagctttcagttcagtgcttaagaactaatgtttcccatcatgccaatgtcat 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tgtaacacagctttcagttcagtgcttgagaactaatgtttcccatcatgcca------- 373
Query: 181 gtattattcccatcatgccaatgtcatgtattattcccatcatgccaatgtcatgtatta 240
| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 374 ----------------g----tgtcatgtattactcccatcatgccaatgtcatgtatta 413
Query: 241 ttcccatcatgccaatgtcatgtattattcctaacctctgaagaatgacaatcttttgat 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 414 ttcccatcatgccaatgtcatgtattattcctaacctccgaagaatgacaatcttttgat 473
Query: 301 attttaaatggcaatatttccaagttataacctggtgcttaactgaaaggctgttttcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 attttaaatggcaatatttccaagttataacctggtgcttaactgaaaggctgttttcac 533
Query: 361 ccaatacatgtagattcaagctctaatgaacaggaatcgatctctccattctcattgtgt 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ccaatacacgtagattcaagctctaatgaacaggaatcgatctctccattctcattgtgt 593
Query: 421 acagaaggacttggatcctccatattcatcatgtactaatttaacttttgtgtctgataa 480
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 594 acagaaggacttggatcctccatattcatcatgtactaatttaacttctgtatctgataa 653
Query: 481 ataatacttcagggaaaaaaa 501
|||||||||||||||||||||
Sbjct: 654 ataatacttcagggaaaaaaa 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
