Query= MSMg01no411_o22.b1 MSMg01no411_o22.b1 CHROMAT_FILE:
MSMg01no411_o22.b1 PHD_FILE: MSMg01no411_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:08 2005
(522 letters)
>mm_chr1_177445061_177445982
Length = 922
Score = 855 bits (442), Expect = 0.0
Identities = 481/494 (97%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgctattatctctatacctgataaagctctcaaacctaaaggagaaaaacgg 64
||||||||||||| || |||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 206 gaattccatgctagaat-tctatacctgataaagctctcaaaactaaaggagaaaaatgg 264
Query: 65 aatcagcacagagctatgaccccatcatgtttgaagccagcctgtgctgcacagcaagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatcagcacagagctatgaccccatcatgtttgaagccagcctgtgctgcacagcaagag 324
Query: 125 cctgtagtcagaaacaacaaagagaaagacaaaaagactaaagacaaaacaagaagttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgtagtcagaaacaacaaagagaaagacaaaaagactaaagacaaaacaagaagttct 384
Query: 185 tttccatggtaacagtaagaaaaggaaaggtagtgtggctatgtcaacgttaaaacacac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttccatggtaacagtaagaaaaggaaaggtagtgtggctatgtcaacgttaaaacacac 444
Query: 245 acctcaagcagagagcatttctatagataaagctatctttttcagtaatctttcatccga 304
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 acctcacgtagagagcatttctatagataaagctatctttttcagtaatctttcatctga 504
Query: 305 agagatgggttcagtgatgggg-agtgggtgttgctcttccagaggactcaagcttgatc 363
||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 505 agagatgggctcagtgatgggggagtgggtgttgctcttccagaggacccaagcttgatc 564
Query: 364 tccaagaaccaatgtagggcagctaccaccacctctaactcaagattcaggggatcttct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccaagaaccaatgtagggcagctaccaccacctctaactcaagattcaggggatcttct 624
Query: 424 agcctctgagagaacagaatccatgtgatttacactctctctctctctctctctctctct 483
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 625 agcctctgagagaacagaatccatgtgatttacgctctctctctctctctctctttctct 684
Query: 484 ctctctctctctct 497
||||||||||||||
Sbjct: 685 ctctctctctctct 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_o22.g1 MSMg01no411_o22.g1 CHROMAT_FILE:
MSMg01no411_o22.g1 PHD_FILE: MSMg01no411_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:08 2005
(497 letters)
>mm_chr1_177614843_177615739
Length = 897
Score = 953 bits (493), Expect = 0.0
Identities = 496/497 (99%)
Strand = Plus / Minus
Query: 1 ctggggaggaacagtggtacatcttaatgtgggattataggtaactttacattttagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctggggaggaacagtggtacatcttaatgtgggattataggtaactttacattttagata 638
Query: 61 gatttccccatccaggcttctcaggtgaagcatgccacctggttggctggaatttcataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gatttccccatccaggcttctcaggtgaagcatgccacctggttggctggaatttcataa 578
Query: 121 gcactggtaatggacagagggtatgactactacatgtctgttacctggagacgggaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gcactggtaatggacagagggtatgactactacatgtctgttacctggagacgggaggtt 518
Query: 181 ttccctctagaactacctgctataccccagcagtgaaaaccctctgtactgtgggaaggg 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttccctctagaactacctgctacaccccagcagtgaaaaccctctgtactgtgggaaggg 458
Query: 241 gactacagtatgctctcagtatattcttactcctctttagtgaggaaagcagggccagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gactacagtatgctctcagtatattcttactcctctttagtgaggaaagcagggccagcc 398
Query: 301 agccattcacatgaatgacacatgctgagagtagacagccattgattggtcttagtgttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agccattcacatgaatgacacatgctgagagtagacagccattgattggtcttagtgttt 338
Query: 361 gctttttttaatacaacaaagtgaaaacattgggtagatcttaaggtttaaatctagcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gctttttttaatacaacaaagtgaaaacattgggtagatcttaaggtttaaatctagcct 278
Query: 421 aacaactgaaatacctgaaatgacctaaaaatagcaattaagaaaataacaattctaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aacaactgaaatacctgaaatgacctaaaaatagcaattaagaaaataacaattctaaga 218
Query: 481 tcagcaaaatggatggt 497
|||||||||||||||||
Sbjct: 217 tcagcaaaatggatggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
