Query= MSMg01no412_b01.b1 MSMg01no412_b01.b1 CHROMAT_FILE:
MSMg01no412_b01.b1 PHD_FILE: MSMg01no412_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:19 2005
(630 letters)
>mm_chr1_141327981_141329010
Length = 1030
Score = 890 bits (460), Expect = 0.0
Identities = 467/470 (99%), Gaps = 2/470 (0%)
Strand = Plus / Minus
Query: 160 tggaagttcgtcattttttaaaatgcaccatgtggtgaagatgctgataagtgatgatgc 219
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1030 tggaagttcgtcattttttaaaatgcatcatgtggtgaagatgctgataagtgatgatgc 971
Query: 220 tatgcttgtacaaagagtgataaccatgtggtgaggatgctgatgagggatggtgctatg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 tatgcttgtacaaagagtgataaccatgtggtgaggatgctgatgagggatggtgctatg 911
Query: 280 tctgtagaggctgcctgaataagagctatctgcactttttcaattttgctgtgaacctaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 tctgtagaggctgcctgaataagagctatctgcactttttcaattttgctgtgaacctaa 851
Query: 340 aactatttttgaacaaaagac--atttttgagactgtaattactcattttacacttctct 397
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 850 aactatttttgaacaaaagacatatttttgagactgtaattactcattttacacttctct 791
Query: 398 tttctctctccaaacaataaagatttttaagaggaagaagtacagtttaatagtagtgag 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tttctctctccaaacaataaagatttttaagaggaagaagtacagtttaatagtagtgag 731
Query: 458 ctagcaagagtcagataatcagtgagtagtggactacttcaccaaagtgtaacttaccca 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ctagcaagagtcagataatcagtgagtagtggactacttcaccaaagtgtaacttaccca 671
Query: 518 ggtggaacttctcttgatgctttaaccgtgcaaaccgggatttgaaatgttcttcacaat 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggtggaacttctcttgatgctttaaccgtgcaaaccgggatttgaaatgttcttcacaat 611
Query: 578 aggtacatttaaagggtttatcttgtgaatgcagaatcatgtgttcttcc 627
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aggtacatttaaagggtttatcttgtgaatgcagaatcatgtgttcttcc 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_b01.g1 MSMg01no412_b01.g1 CHROMAT_FILE:
MSMg01no412_b01.g1 PHD_FILE: MSMg01no412_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:19 2005
(515 letters)
>mm_chr1_141209700_141210614
Length = 915
Score = 942 bits (487), Expect = 0.0
Identities = 504/515 (97%), Gaps = 10/515 (1%)
Strand = Plus / Plus
Query: 1 actgcacccaggtaccagaaaggacctcatagcttgtccttggccagagttaccccatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcacccaggtaccagaaaggacctcatagcttgtccttggccagagttaccccatag 260
Query: 61 ctacttcctagcaacagttaatcaaggattagtctgattgtttccgatgtattttcagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacttcctagcaacagttaatcaaggattagtctgattgtttccgatgtattttcagac 320
Query: 121 cacttgtgattgtctatggtcttgcttcagagcatccacctgtcagcttacaatagatat 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttgtgattgtatatggtcttgcttcagagcatccacctgtcagcttacaatagatat 380
Query: 181 tcagttagatgcttgccaggagagacacctcctcacttatttccagttcttataaaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagttagatgcttgccaggagagacacctcctcacttatttccagttcttataaaacct 440
Query: 241 tgtcccgatgagagtcgatgagagtttggggcagcttcactaaactgtcctacgttcaaa 300
||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcc---tga-------tgagagtttggggcagcttcactaaactgtcctacgttcaaa 490
Query: 301 cagtgagtaagcccaaactctagattgtgataaagagaccctactatcattgcatcaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagtgagtaagcccaaactctagattgtgataaagagaccctactatcattgcatcaggt 550
Query: 361 tcacaaatgcttcatggcacaacaaaagcatgtgtgttaaaatctggtcagagattatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcacaaatgcttcatggcacaacaaaagcatgtgtgttaaaatctggtcagagattatat 610
Query: 421 gttttatcctgatgctgcctccagaaaaagctcctacaggaactagacaaaaccaccaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gttttatcctgatgctgcctccagaaaaagctcctacaggaactagacaaaaccaccaca 670
Query: 481 aatcaaaatttgttgtcttcatataggaaatagga 515
|||||||||||||||||||||||||||||||||||
Sbjct: 671 aatcaaaatttgttgtcttcatataggaaatagga 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
