Query= MSMg01no412_f16.b1 MSMg01no412_f16.b1 CHROMAT_FILE:
MSMg01no412_f16.b1 PHD_FILE: MSMg01no412_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:41 2005
(586 letters)
>mm_chr6_131191738_131192723
Length = 986
Score = 1040 bits (538), Expect = 0.0
Identities = 575/592 (97%), Gaps = 10/592 (1%)
Strand = Plus / Plus
Query: 5 gaattcattagaattacggaactcaagccatctacagctcaaaatggagcagatgatttt 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattcattagaagtatggaactcaagccatctacagctcaaaatggagcagatgatttt 254
Query: 65 ctttagtttttgaacataacattgttttt--gtattccaagcttttgtcctttttttgtt 122
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 255 ctttagtttttgaacataacattttttttttgtattccaagcttttgtcctttttttgtt 314
Query: 123 gctgttggctgttttctttatttacatttcaaatgttacatacattcaccaaattctccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gctgttggctgttttctttatttacatttcaaatgttacatacattcaccaaattctccc 374
Query: 183 ttttaatcattctttttttaaatttttgattattttagatgactttcctctgtagtattc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttttaatcattctttttttaaatttttgattattttagatgactttcctctgtagtattc 434
Query: 243 attgcatctttcttccataatttatatgttttgactaaattaaatgtgaatttttctaag 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 435 attgcatctttcttccataatttatatgttttgacaaaattaaatgtgaatttttctaag 494
Query: 303 atgaaaaaaaaa----gataacaacccacccacaaaaccttcgacccaaaatgtgccctg 358
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 495 atgaaaaaaaaaaaaagataacaacccacccaaaaaaccttcgacccaaaatgtgccctg 554
Query: 359 cctacaagatgggcaggacaaagtttcatgtgcactgaagtgaagatatgtcatgagcag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 555 cctacaagatgggcaggacaaagtttcatgtgcactgaagtgaagatatgtcacgagcag 614
Query: 419 gccatgtatttgaaaacaaggcataaggaaaatacacacacacacacacacacacacaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gccatgtatttgaaaacaaggcataaggaaaatacacacacacacacacacacacacaca 674
Query: 479 cac----ttgtttttatgaatgaatccatatggatactgagaacattttagcataaatat 534
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cacacacttgtttttatgaatgaatccatatggatactgagaacattttagcataaatat 734
Query: 535 tttgtaaatacactcttactggaaacttttattttctgtcagcaacaaatgt 586
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 735 tttgtaaatacactcttgctggaaacttttattttctgtcagcaacaaatgt 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_f16.g1 MSMg01no412_f16.g1 CHROMAT_FILE:
MSMg01no412_f16.g1 PHD_FILE: MSMg01no412_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:41 2005
(474 letters)
>mm_chr1_161274940_161275807
Length = 868
Score = 497 bits (257), Expect = e-145
Identities = 391/447 (87%), Gaps = 30/447 (6%)
Strand = Plus / Plus
Query: 5 ccatcagtgtaactatgaactttgctgttggcagtgtggctatctaatttttgtgatagg 64
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 ccatcagtgtaactatgaactttgctgttggcagtgtgg----ctaatttttgtgatagg 260
Query: 65 gaaacaaattcttttaaatagaaataaat-agcaacaa-aa-ataaaagcttattgagcc 121
|||||||||||||||||||| |||| ||| | |||||| || | ||||| ||||||||||
Sbjct: 261 gaaacaaattcttttaaataaaaat-aataaacaacaacaaca-aaaagtttattgagcc 318
Query: 122 acagatgagctgggaacacctttttgtcaggtggggtgacaaaagtcttttgaagaagtt 181
|||| |||||| |||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 319 acagctgagctaggaacacctttttgtcagatggggtg---agagtcttttgaagaagtt 375
Query: 182 acacttgtgggctgtacagaatgttctggctggggctggagagaggctcagtgaaaaaga 241
||||| |||| | ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 376 gcacttatgggttatacagaatgttctggctggggctggagagaggctcagagaataaga 435
Query: 242 tcactggct-gctcctacagaggatctgagttcagtccccagcacctatgtagcagctca 300
|||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 436 gcactgg-tcgctcctacagaggatctgggttcagtccccagcacctacgtagcagctca 494
Query: 301 ctgccacttatgattc------------tgacgtccccttctgggctccttgagcaccag 348
|||| |||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 495 ctgctgcttatgattccagtaggagatctgacgtcctcttctgggctccttaagcaccag 554
Query: 349 gcatgcatgtggtgcacatacaaatatccagatacaacactcgcacataaaaatgaaagc 408
||||||||||||||||||| |||| ||||||||||||| ||| |||||||| |||||
Sbjct: 555 gcatgcatgtggtgcacattcaaagatccagatacaacgctcacacataaa--tgaaaat 612
Query: 409 aaatcttattttaaa-ggaa-aaaaat 433
||||||||||||||| |||| ||||||
Sbjct: 613 aaatcttattttaaaaggaagaaaaat 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 868
Length adjustment: 10
Effective length of query: 464
Effective length of database: 858
Effective search space: 398112
Effective search space used: 398112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
