NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGATTCTTACCAATTTTATTAATTTTGACAAACAGATGTTGT
GATCACTACTACAGGTCAAGATATAGCCTTCTCAAATACTTCAGGAACAA
TCAATACTTAACATTTCCCTAGCAATATCTCATGTGTCCTTTCTACCTAC
ACTTATTTGACCTTCGTATACTATGCTTCGGCCGCCCCTTCCCCGGCAAT
TTGCCTATAGAGTATTATTTCATTTTTAAGAGTCAGTTGGTTAAATTATT
TATAGAAATCATTGTTATAAGTACTAAATTTTAAAATTATTTCTATTTAT
ACATGTGTGTGTGTGCATGTGTGTGTATGTGTATGCATGTGTGTGTGTGC
ATATGTGCATGTGTATATGTATTCTAAGACATAGTATATAGAGGTCACAG
TATAGCTTGCAGAAGTCAGTTCTCTACTTTCACAGTGTAGGGAATGGGGA
CCACACCCATGTCCTCAAACTTGATAGCACCACCTCAATCTATTGGATCA
TTCCATCAGCCACATTGTTATATATAACTTTTATTTCACATGTTTTGTAA
ATTGTCTTTCCATCTTGAGGGGGTATTTTCTCAACATTATTTGTGAAGTG
AGAAATTACAATGCAATTTTGATGCATATCATATGCGGGCCTGTTTAGCA
ATTGGCCCTTGTGTATAAACACCAAATTGCCACCTTACCTTCTTCCTCTA
CCCTTTATTG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTAAACTGAAATCATTGTCAA
AAGTCATAGATAGGAAGCCATAATCTTAGGAGAGAGCCTATTGATTATAC
ACACACACACACACACACACACACACACAGAGAGAGAGACATAGACACAT
AGACACACAGACAGACACAAACATATATATGTATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATAGTGTGTGTG
TGAGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGACAAGTATATATATAT
ATATATATATATATATATATATAGAGAGAGAGAGAGAGGGGGGCGGGTAT
ACATCTATACATATATATATATACATACAGGCGCGCGGGCGCGCGAGCGA
CTGATTCACCTTCCCTCGTGAGTGATACATACATACATATACACATATAC
CTCCCCTCCCCCCTTTTTTCTCCCCCCCTTTTCTTTTTGCCCCTTTCTTC
TTCCCCCTCTTCCATATCCGCTTTTCCCCCCTCCTCTTTTCCTCCTCTCC
CCCTTTTTGTCGCCCCCTTTTTTTCTTTCTACCTCATCCAATTCCCGTTG
TCTTCCCTATATTTTCCCCCCGCCCCGCTTCTCTTGATTCCTTCCATATC
CCCTCTTATCCCCCCCCATGTCCCCCCACTATTCTTATTN

Query= MSMg01no412_h19.b1 MSMg01no412_h19.b1 CHROMAT_FILE:
MSMg01no412_h19.b1 PHD_FILE: MSMg01no412_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:51 2005
         (544 letters)



>mm_chr1_106472680_106473622
          Length = 943

 Score =  942 bits (487), Expect = 0.0
 Identities = 502/507 (99%), Gaps = 1/507 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgattcttaccaattttattaattttgacaaacagatgttgtgatcactact 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattctatgattcatatcaattttattaattttgacaaacagatgttgtgatcactact 447

                                                                       
Query: 65  acaggtcaagatatagccttctcaaatacttcaggaacaatcaatacttaacatttccct 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aca-gtcaagatatagccttctcaaatacttcaggaacaatcaatacttaacatttccct 388

                                                                       
Query: 125 agcaatatctcatgtgtcctttctacctacacttatttgaccttcgtatactatgcttcg 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agcaataactcatgtgtcctttctacctacacttatttgaccttcgtatactatgcttcg 328

                                                                       
Query: 185 gccgccccttccccggcaatttgcctatagagtattatttcatttttaagagtcagttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gccgccccttccccggcaatttgcctatagagtattatttcatttttaagagtcagttgg 268

                                                                       
Query: 245 ttaaattatttatagaaatcattgttataagtactaaattttaaaattatttctatttat 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 267 ttaaattatttatagaaatcattgttataagtacaaaattttaaaattatttctatttat 208

                                                                       
Query: 305 acatgtgtgtgtgtgcatgtgtgtgtatgtgtatgcatgtgtgtgtgtgcatatgtgcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 acatgtgtgtgtgtgcatgtgtgtgtatgtgtatgcatgtgtgtgtgtgcatatgtgcat 148

                                                                       
Query: 365 gtgtatatgtattctaagacatagtatatagaggtcacagtatagcttgcagaagtcagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gtgtatatgtattctaagacatagtatatagaggtcacagtatagcttgcagaagtcagt 88

                                                                       
Query: 425 tctctactttcacagtgtagggaatggggaccacacccatgtcctcaaacttgatagcac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  tctctactttcacagtgtagggaatggggaccacacccatgtcctcaaacttgatagcac 28

                                      
Query: 485 cacctcaatctattggatcattccatc 511
           |||||||||||||||||||||||||||
Sbjct: 27  cacctcaatctattggatcattccatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)