Query= MSMg01no412_j17.b1 MSMg01no412_j17.b1 CHROMAT_FILE:
MSMg01no412_j17.b1 PHD_FILE: MSMg01no412_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:02 2005
(440 letters)
>mm_chr1_90824764_90825600
Length = 837
Score = 820 bits (424), Expect = 0.0
Identities = 436/440 (99%), Gaps = 3/440 (0%)
Strand = Plus / Minus
Query: 1 ccccggggttgatcctcatcactgtataactagggcattgtggcacatacctgttatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ccccggggttgatcctcatcactgtataactagggcattgtggcacatacctgttatcac 568
Query: 61 agtacctagcaggtagaagcagaaggatcagaagctaggggtaattctcaaaaaaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agtacctagcaggtagaagcagaaggatcagaagctaggggtaattctcaaaaaaaataa 508
Query: 121 aataaaaattaaaatgatactttttaaatttcatagtgggaataactaaaaaaaaatttc 180
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 507 aataaaaattaaaatgatactttttaaatttcatagtggaaataact-aaaaaaaatttc 449
Query: 181 tgcaaatacatcatagaaaaaaaaagtcaccttattgggaacaaagagagagatatacac 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgcaaatacatcatag-aaaaaaaagtcaccttattgggaacaaagagagagatatacac 390
Query: 241 acttaactttttttattgcaaacatttatttatggtgtatatgagtgtgtgtgagtgcat 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acttaac-ttttttattgcaaacatttatttatggtgtatatgagtgtgtgtgagtgcat 331
Query: 301 atgccatggcatgtgtatggagatcagaggacaacttgagtcaattctttccttccacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atgccatggcatgtgtatggagatcagaggacaacttgagtcaattctttccttccacct 271
Query: 361 gtgggttctgaggcttgactcgggtcatcaggcttggtggcaagcacctttatccctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtgggttctgaggcttgactcgggtcatcaggcttggtggcaagcacctttatccctttt 211
Query: 421 tttcactgagccatctcacc 440
||||||||||||||||||||
Sbjct: 210 tttcactgagccatctcacc 191
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 837
Length adjustment: 9
Effective length of query: 431
Effective length of database: 828
Effective search space: 356868
Effective search space used: 356868
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_j17.g1 MSMg01no412_j17.g1 CHROMAT_FILE:
MSMg01no412_j17.g1 PHD_FILE: MSMg01no412_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:02 2005
(474 letters)
>mm_chr1_90642622_90643495
Length = 874
Score = 833 bits (431), Expect = 0.0
Identities = 464/475 (97%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 1 cacacaattaaacaaaaagtgacgttctattgattt-ccctggtttccctttgtttaacc 59
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 201 cacacaattaaacaaaaagtgacgttctattgatttcccccggtttccctttgtttaacc 260
Query: 60 aagatcagggtgtgaactcacaggccatagttctcccatgggcatgctggagttaaaagc 119
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 261 aagatcagggtgtgaaatcacagggcatagttctcccatgggcatgctggagttaaacgc 320
Query: 120 tactgttaattccttacctttatttttgaccgttgagctagagataagcactgctttgtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgttaattccttacctttatttttgaccgttgagctagagataagcactgctttgtt 380
Query: 180 acatggaaaagcaaattgagttaagaatgcaatgtctcagccgggcagtggcggcacatg 239
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 381 acatggaaaagcaaattgagttaagaatgcaatgtctcagctgggcagtggcggcacacg 440
Query: 240 cctttgattctctacacttgggaggcagagactggaggatttctgagttcgaggccagcc 299
||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttga-tcccaacacttgggaggcagagactggaggatttctgagttcgaggccagcc 499
Query: 300 tggtctacagagtgaggtccaggacagccagggctacacagagaaaccctgactcaaaaa 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggtctacagaatgaggtccaggacagccagggctacacagagaaaccctgactcaaaaa 559
Query: 360 acaaacaaacaaaaataaacaaagaatgcaatgtctcttctttccaataagagggagagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acaaacaaacaaaaataaacaaagaatgcaatgtctcttctttccaataagagggagagg 619
Query: 420 tgaaagacatgtgcgagtaacttgaaaagatggggcaggtctatgacccccagag 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgaaagacatgtgcgagtaacttgaaaagatggggcaggtctatgacccccagag 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
