NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTATCTCTGAGTCCCATTACCCAAGGAGCTAAAGGGG
TCTGCAATCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCA
GAGCTCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCA
TCATTGGAAAGAGAGACCCATTAGTCTTGCAAACTTTATATGCCTCAGTA
CAGGGGAATGCCAGGGTCAAGAAGTGGGAGTGAGTGGGTAGGGGAGTAGG
GGGAGNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNNNNNNNNTNNNNNN
NNNTTNNNTTTNTTTTTTTTTTTTTTTTTTTTTTNNTTGTTTGGTNTTTT
NTTTTTTTNTTTNNNTNNTTTTTNTNNNTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNTNTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTNTTTNTTNNTTTTTTNTTTTTTTTNN
TTTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTT
TTTTTTTNTTTTN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTTCCAAACAAAACAACC
ACATTTTAAAGGCAGGAATAAATGATATAAGGAAAAAAAAGACAGGGCTT
GGTTACATAATAACACAAAACATCAGAACACTGGGTGAAAGGTCATATTT
AGAAGTCAGTTATGAATATTAGCCTGTGAGTCCTAATAAGCAAATTATTT
AAAATAGATTAAAATCTCAGGTTTGAGCACTACTTCCTGAAATAAAAAGC
TAATGATTGCCTAATGTCAATTGTTAGGACCACAAGGAAGAAAAAGAAAG
GGAAATAAAAATCATTGTTTAGAGTTACTTAGATCAGTATGTTTGAGATA
GAATTTTTTGGTAAAAAAAAAATCAAAAATAAAAAAAAAGAATGTTTGGT
CACAAGCACAGGGAAGTGTTTTAGTTAGTGTTCTATTGCTGTGAGGAGAC
ACTGAGCAAGGCAACTTATAGAAGAATGATTTAATTGGAGGATTGCTTAT
AGTTTCAGAGGGTTAGTCCATTATTGTAATGGCCACAAACGTGGTATCAA
GGTATAAGTAATGGGACTGAGTGCATGCCCATGCCAAAAAGGATAACCTG
GGCCTGGCAAGGGCCTTTTATCTTTAAATACCCTCAGTGAGCCCCTTCTT
CTCGCAAAGTACTCTCCCCATCCTCCCCAGTGTTTGGGCAAAAGTGAAAC
CCCTTTTTTTTATTTTTTTGG

Query= MSMg01no412_l24.g1 MSMg01no412_l24.g1 CHROMAT_FILE:
MSMg01no412_l24.g1 PHD_FILE: MSMg01no412_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:13 2005
         (446 letters)



>mm_chr1_142525561_142526407
          Length = 847

 Score =  810 bits (419), Expect = 0.0
 Identities = 440/447 (98%), Gaps = 2/447 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtttccaaacaaaacaaccacattttaaaggcaggaataaatgatataaggaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agtgtttccaaacaaaacaaccacattttaaaggcaggaataaatgatataaggaaaaaa 475

                                                                       
Query: 61  aagacagggcttggttacataataacacaaaacatcagaacactgggtgaaaggtca-ta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 474 aagacagggcttggttacataataacacaaaacatcagaacactgggtgaaaggtaagta 415

                                                                       
Query: 120 tttagaagtcagttatgaatattagcctgtgagtcctaataagcaaattatttaaaatag 179
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tttagaagtcagttatgaagattagcctgtgagtcctaataagcaaattatttaaaatag 355

                                                                       
Query: 180 attaaaatctcaggtttgagcactacttcctgaaataaaaagctaatgattgcctaatgt 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 attaaagtctcaggtttgagcactacttcctgaaataaaaagctaatgattgcctaatgt 295

                                                                       
Query: 240 caattgttaggaccacaaggaagaaaaagaaagggaaataaaaatcattgtttagagtta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caattgttaggaccacaaggaagaaaaagaaagggaaataaaaatcattgtttagagtta 235

                                                                       
Query: 300 cttagatcagtatgtttgagatagaattttttggtaaaaaaaaaatcaaaaataaaaaaa 359
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 234 cttagatcagtatgtttgagatagaattttttggt-aaaaaaaaatcaaaaataaaaaaa 176

                                                                       
Query: 360 aagaatgtttggtcacaagcacagggaagtgttttagttagtgttctattgctgtgagga 419
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 175 aagaatgtttggtcacaagcacaggaaagtgttttagttagtgttctattgctgtgagga 116

                                      
Query: 420 gacactgagcaaggcaacttatagaag 446
           |||||||| ||||||||||||||||||
Sbjct: 115 gacactgaccaaggcaacttatagaag 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space:   364932
Effective search space used:   364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)