Query= MSMg01no412_m23.b1 MSMg01no412_m23.b1 CHROMAT_FILE:
MSMg01no412_m23.b1 PHD_FILE: MSMg01no412_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:18 2005
(501 letters)
>mm_chr1_28138038_28138931
Length = 894
Score = 874 bits (452), Expect = 0.0
Identities = 483/496 (97%), Gaps = 7/496 (1%)
Strand = Plus / Plus
Query: 6 gaattcatatcatttcttcattataaagtagccctaaaatagttcaaatctaaatgcaaa 65
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatatcatttcatgattataaagtagccctaaaatagttcaaatctaaatgcaaa 265
Query: 66 agtgaatgttgttcaacaaactctacaaaactctattggatactcaataggagttccaac 125
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 agtgaatgttgtttaacaaactctacaaaact--attggatactcaataggagttccaac 323
Query: 126 attaaccaatttggagaaacgttaaatccataccccataaacctttcattttaatcaata 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attaaccaatttggagaaacgttaaatccataccccataaacctttcattttaatcaata 383
Query: 186 ataaattctttcttcctgatgctcaggataagtattctttgtgttattattttttacaca 245
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 ataaattctt----cctgatgctcaggataagtgttctttgtgttattattttttacaca 439
Query: 246 catccacaaattctctgggtgtcccttcagtgataatgtatataattcattttgaaatct 305
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 440 catccacaaattctctgggtgtcccttcagtgataaagga-ataattcattttgaaatct 498
Query: 306 gatataagcatcccttatcagctatgttactaagttctctgtataaaatataccaatttc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gatataagcatcccttatcagctatgttactaagttctctgtataaaatataccaatttc 558
Query: 366 ttctctctactatgacagagacttcttctgacctaacatacctacactatcccctgtcac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttctctctactatgacagagacttcttctgacctaacatacctacactatcccctgtcac 618
Query: 426 ctgagatctggcgtttctgtacaggccaggtcatgttagtcagcagataaaaatcaaagt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgagatctggcgtttctgtacaggccaggtcatgttagtcagcagataaaaatcaaagt 678
Query: 486 tagcatggaaattgtg 501
||||||||||||||||
Sbjct: 679 tagcatggaaattgtg 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 894
Length adjustment: 10
Effective length of query: 491
Effective length of database: 884
Effective search space: 434044
Effective search space used: 434044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_m23.g1 MSMg01no412_m23.g1 CHROMAT_FILE:
MSMg01no412_m23.g1 PHD_FILE: MSMg01no412_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:18 2005
(402 letters)
>mm_chr1_28366956_28367760
Length = 805
Score = 683 bits (353), Expect = 0.0
Identities = 391/405 (96%), Gaps = 3/405 (0%)
Strand = Plus / Minus
Query: 1 tttctggttatctaggacagaaccctccgctgtcattatgagaagattgagatcactgaa 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 707 tttctggttatctaggacagaaccctcagctgtcattatgagaagattgagatcactgaa 648
Query: 61 ctgaagtcttctggaagtattttctcatgaccagtacacagacagtgaggactaccaaat 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 647 ctgaagtcttctggaagtattttctcatgaccagtacacagacagtcaggactaccaaat 588
Query: 121 attcacctgaacttgacaacctgcaagagttacccatacattactgttttggggaacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 587 attcacctgaacttgacaacctgcaagagttacccatacattactgttttggggagcatg 528
Query: 181 aaaaaccgaagtgttcattcttggaagacaaggagataaagcgtgtacctagttgtt--- 237
||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct: 527 aaaaaccgaagtgttcattcttggaagtcgaggagataaagcttgtacctagttgttgtt 468
Query: 238 cccaaagatacaccttgagagacaattcgttaaatgttagactccatcatggtagagagg 297
|||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 467 cccaaagatacaccaagacagacaattggttaaatgttagactccatcatggtagagagg 408
Query: 298 acctgctccaaggatatttgagatattatgatcataggaccaatctttatttcctcaact 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ccctgctccaaggatatttgagatattatgatcataggaccaatctttatttcctcaact 348
Query: 358 cactactgttcattttaaagaaactattcagacttcatgatattg 402
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cactactgttcattttaaagaaactattcagacttcatgatattg 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 805
Length adjustment: 9
Effective length of query: 393
Effective length of database: 796
Effective search space: 312828
Effective search space used: 312828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
