Query= MSMg01no412_n18.b1 MSMg01no412_n18.b1 CHROMAT_FILE:
MSMg01no412_n18.b1 PHD_FILE: MSMg01no412_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:22 2005
(397 letters)
>mm_chr1_155406060_155406856
Length = 797
Score = 514 bits (266), Expect = e-150
Identities = 313/354 (88%), Gaps = 40/354 (11%)
Strand = Plus / Minus
Query: 44 acaggcagatctctgagtttgaggccagcctggtctatagtgtgagttccaggattccaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 acaggcagatctctgagtttgaggccagcctggtctatagtgtgagttccaggattccaa 738
Query: 104 ggttacacagagaaaccatgacttagagagagagagagagagagagagagagacagagac 163
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 737 ggttacacagagaaaccatgactt----agagagagagagagagagagagagacagagac 682
Query: 164 agagacagagacagagacagagacagagacagagacagagacagagacagagacagagac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagacagagacagagacagagacagagacagagacagagacagagacagagacagag-- 624
Query: 224 agagacagagacagagacagagacagagatttatacagagacagagacagagacagagac 283
||||||||||||||||||||||||||
Sbjct: 623 ----------------------------------acagagacagagacagagacagagac 598
Query: 284 tcttctcccgcaggtttagaggaggtaagtttggtggccctgagagcaccctgggccgag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcttctcccgcaggtttagaggaggtaagtttggtggccctgagagcaccctgggccgag 538
Query: 344 agtggctgaaaggagacactgccccctagtggaagggaacatccagagtcgaga 397
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 537 agtggctgaaaggagacactgccccctagtggaagggaacatcaagagtcgaga 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_n18.g1 MSMg01no412_n18.g1 CHROMAT_FILE:
MSMg01no412_n18.g1 PHD_FILE: MSMg01no412_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:22 2005
(342 letters)
>mm_chr1_155222829_155223570
Length = 742
Score = 627 bits (324), Expect = 0.0
Identities = 339/346 (97%), Gaps = 5/346 (1%)
Strand = Plus / Plus
Query: 1 acaatttaaaaaccaagaacattcataagttgatatcactttaagcttttgaaaaatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatttaaaaaccaagaacattcataagttgatatcactttaagcttttgaaaaatgaa 260
Query: 61 gaactgaaataatttgtaaaacctaaagggaggcctcctgtggtctgtaaatgctgactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaactgaaataatttgtaaaacctaaagggaggcctcctgtggtctgtaaatgctgactt 320
Query: 121 ccagaagttaaacaagttagaggccaacctgacctacttgtgaaagagagagaaagaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagaagttaaacaagttagaggccaacctgacctacttgtgaaagagagagaaagaaag 380
Query: 181 aaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaag 440
Query: 241 gaaggaat----aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 296
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 500
Query: 297 aaagaaagaaagaaagaaagaaagaaagaaagaagagaggagggga 342
|||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 501 aaagaaagaaagaaagaaagaaagaaagaaagaa-agaagagggga 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 185
Number of extensions: 64
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
