Query= MSMg01no413_b08.b1 MSMg01no413_b08.b1 CHROMAT_FILE:
MSMg01no413_b08.b1 PHD_FILE: MSMg01no413_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:39 2005
(560 letters)
>mm_chr1_19856034_19856993
Length = 960
Score = 1083 bits (560), Expect = 0.0
Identities = 560/560 (100%)
Strand = Plus / Minus
Query: 1 ctatcaaagcaagtatcatgtcctctgccaaggagaacactcccttagttcatttcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ctatcaaagcaagtatcatgtcctctgccaaggagaacactcccttagttcatttcttcc 701
Query: 61 tgacaggagcaggtttgcctctctttgaagtttatgattctaacatagcaacaggtaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgacaggagcaggtttgcctctctttgaagtttatgattctaacatagcaacaggtaaat 641
Query: 121 atttttcttcagtgcttcaggcttttggcattcagaattaaaccaagtcttcgaataatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 atttttcttcagtgcttcaggcttttggcattcagaattaaaccaagtcttcgaataatc 581
Query: 181 taagtttccattgtatgtctacaagaaggctagaagagcagagctcagagtttagataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 taagtttccattgtatgtctacaagaaggctagaagagcagagctcagagtttagataat 521
Query: 241 tatccagataattacccaggcctctaagtgacttttattggtttacataataaaccattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tatccagataattacccaggcctctaagtgacttttattggtttacataataaaccattt 461
Query: 301 gggaagaaggaggcttttctcttttaattgcctgtaaaacaaaatcactgtattatcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gggaagaaggaggcttttctcttttaattgcctgtaaaacaaaatcactgtattatcaaa 401
Query: 361 tcgccttactctttaaaaagattaaataaaaattacttgcaataaatgtgaacacaatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcgccttactctttaaaaagattaaataaaaattacttgcaataaatgtgaacacaatga 341
Query: 421 ccgggaagttcttgttttgcaagccttcacaccctcaagagaaatgtatgctgctgggtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ccgggaagttcttgttttgcaagccttcacaccctcaagagaaatgtatgctgctgggtt 281
Query: 481 aaaatgagccagtttgacaaggcctggaggactcttccatgtggattgaccactgtgcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaaatgagccagtttgacaaggcctggaggactcttccatgtggattgaccactgtgcag 221
Query: 541 agaaagcactcttcattgtc 560
||||||||||||||||||||
Sbjct: 220 agaaagcactcttcattgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_b08.g1 MSMg01no413_b08.g1 CHROMAT_FILE:
MSMg01no413_b08.g1 PHD_FILE: MSMg01no413_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:39 2005
(475 letters)
>mm_chr1_19654387_19655261
Length = 875
Score = 859 bits (444), Expect = 0.0
Identities = 468/476 (98%), Gaps = 2/476 (0%)
Strand = Plus / Plus
Query: 1 cttctctgtgtgacatgttcaaatatttctagggacatgttctcaagcttttaatgtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctctgtgtgacatgttcaaatatttctagggacatgttctcaagcttttaatgtggg 260
Query: 61 tgggaaaacccaaggcctctatactcacttattttt-acttccagtgagatgactgatat 119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tgggaaaacccaaggcctctatactcacttattttttacttccagtgagatgactgatat 320
Query: 120 ccatctttgttctatgagcctcttaattaatgtgaaggaatggttatcacagtagtccca 179
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatccttgctctatgagcctcttaattaatgtgaaggaatggttatcacagtagtccca 380
Query: 180 ggacatggcagccctggtggtctggcatcccttagatcctggaaattagctctattttga 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ggacatggcagccctggtggtctggcatccctcagatcctggaaattagctctattttga 440
Query: 240 tcctccgaaaaccagatacgtgtacgtagtatactgcaggaaggccgcccctctcttgat 299
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 441 tcctccgaaaaccagatacgtgtacatagtatactgcgggaaggccgcccctctcttgat 500
Query: 300 atcaagtatgttttatttttttcctcttcttgccatgaaaaaagcagacaatgcctcaga 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaagtatgtttt-tttttttcctcttcttgccatgaaaaaagcagacaatgcctcaga 559
Query: 360 ggacctggatattaaaatagaagatgcacatatcccatttcactagctaccttgtatatc 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggacctggatattaaaatagatgatgcacatatcccatttcactagctaccttgtatatc 619
Query: 420 tctatgtattgtctctttacctagtatatctctatgtactgcctctttacctagtg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctatgtattgtctctttacctagtatatctctatgtactgcctctttacctagtg 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
