XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TGTTTATCTCTATTTTTAATGGGGCTATTTGGTTCTCTGGAGTTTAACTT
CTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATCAGATGTAGATT
TGTAAAGATCTTTTCCCAATCTGTTTGTTGCCATTTTTTCCTATTGACAG
CATACACCAGCTGGTATGAGGCTTCCAACACACATACAGTAGAGGACTTC
CAGGCCTATGTTTATTCAGAGATGATACACCTAACCCTCAAGAGACTGGA
GGCCCCACGGAGTTTAGAGGTCAGATGGGGTAGAGGATAGGGGCATCTAT
GTGGAGACGGAGTGTGGTGGGGAGGAGATGTGGGATGTGNANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTTTTTTTTTTNNNNNTTTTTTNTTTTTTNTNNTTTTTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTNNNTTTTTNTTTTTTTTN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTCAGGCAGCAAGAGAGCTTCCCTCCTGGGCAC
ATTCACAAAGACCCAGTGGCTACTTGGCAGCTTTGCAAGGGACCTGAGGA
GAGATTTGTGCAGGATCCAGGGCTCCAACTTCCCTTCTGTTTTCTCATGT
GGTCACGACAGCACCATTCAATATTGACTTGCCTGGGTACATAGAGAAGA
GACAGGCTCTGAAAAGCTAGATGGCGCTCCTGGTGGATTCAGCCAACGAG
TTGGTATTCGAGCTGATATACCCACTGAGACTTTCCTGCCCTGAGATCTT
CACGGTCTGTGTGAATGTAGCAGGGCCTTTCTTCAAAGAGAAACCATGGG
GGTCTCCTGCTCAGTCAGAAAAAGAGGGCCTGTAGAAAATTCTAGAACAG
CTGGGGATATAGCTCAGTTGTACAGCAATTGCATGACATACACAAGGCCC
TGGATTACTTCCTAGTACCATCATGAAAGAAGCCCCAGTGAAGAAAGAAG
GGAAGGATTTAAGTAAGGAAGATTGGAAGGGTTTTCATTNTCCTCCTTTT
CCCTCTTATCCCCTTTTGTAACCGGGGTATCTGCCCTCAAAATTTGTTCC
TTTCTCCTCCTTTTTCCCCACCTTGTGTAAACAAATCATTTTCACACAAA
AATTCATTGTTTTGTCTACTTCCTCACACACCTCGTTTGACTATTCTCCT
TTTTCCTCTCTTCTTN

Query= MSMg01no413_b24.g1 MSMg01no413_b24.g1 CHROMAT_FILE:
MSMg01no413_b24.g1 PHD_FILE: MSMg01no413_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:42 2005
         (411 letters)



>mm_chr1_188478614_188479428
          Length = 815

 Score =  748 bits (387), Expect = 0.0
 Identities = 405/413 (98%), Gaps = 4/413 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagagcttccctcctgggcacattcacaaagacccagtggctacttggcagctttgc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 613 caagagagcttccctcctgggcacattcacaaagacccagtggccacttggcagctttgc 554

                                                                       
Query: 61  aagggacctgaggagagatttgtgcaggatccagggctccaacttcccttctgttttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagggacctgaggagagatttgtgcaggatccagggctccaacttcccttctgttttctc 494

                                                                       
Query: 121 atgtggtcacgacagcaccattcaatattgacttgcctgggtacatagagaagagacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgtggtcacgacagcaccattcaatattgacttgcctgggtacatagagaagagacagg 434

                                                                       
Query: 181 ctctgaaaagctagatggcgctcctggtggattcagccaacgagttggtattcgagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctctgaaaagctagatggcgctcctggtggattcagccaacgagttggtattcgagctga 374

                                                                       
Query: 241 tatacccactgagactttcctgccctgag----atcttcacggtctgtgtgaatgtagca 296
            || |||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 373 gatccccactgagactttcctgccctgagtgagatcttcacggtctgtgtgaatgtagca 314

                                                                       
Query: 297 gggcctttcttcaaagagaaaccatgggggtctcctgctcagtcagaaaaagagggcctg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcctttcttcaaagagaaaccatgggggtctcctgctcagtcagaaaaagagggcctg 254

                                                                
Query: 357 tagaaaattctagaacagctggggatatagctcagttgtacagcaattgcatg 409
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 253 tagaaaattctagaacagctggggatatagctcagttgtagagcaattgcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 815
Length adjustment: 9
Effective length of query: 402
Effective length of database: 806
Effective search space:   324012
Effective search space used:   324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)