BAC Information

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BAC

Clone NameMSMg01-413F23
Chromosome1 (Build37)
Map Location 75,687,851 - 75,688,337
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413F23.T7 (MSMg01no413_f23.b1)MSMg01-413F23.TJ (MSMg01no413_f23.g1)
ACCAG509922AG509923
length738788
length of high quality
(start - end)		639 (33 - 671)476 (64 - 539)
definitionCHROMAT_FILE: MSMg01no413_f23.b1 PHD_FILE: MSMg01no413_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:02 2005CHROMAT_FILE: MSMg01no413_f23.g1 PHD_FILE: MSMg01no413_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATATACA
TTGTCCCATAGATTATGTAGCTTTTGAGTCTGGCTAGTTTCAGTAATATG
CAGCACGTGTGAGAGCTATTCAGGCTGTTCCATGAGTCGATGGTTCATTC
ATTTTTATCCATGAGTAACATTCCATTGTATGGATACATACCATAGCTGG
TGGGCATTGGGTAGATTTTGGTTGTAAGAAGTAGGAGTGAACTACTTCTG
GACTTGCAAGCACAAGTCTGTCTGGGCAAAGGTTTTATGTTTCCTTGGGC
AAATTCTAGGTAGGAATTTCTCAGGTCATACGGTAAGTATGGATTCGAAT
TTGTAATAAATCACCCCGCCTTGTTCCCTGTTGGTTTTGTTTTTTTTTTT
TTTGCATTCTCATCAGCAGTGAGGATTGTGGTTGGTTCTCATGCTCATCA
ATATTTGGTTCGGTCCGTCTTTCTAATTTGAGCCGCTCTGGTGATCATAC
AGTGGTATGTCATTGTACAGTTTTAATTTGTATTTCCCTAATGGCTCATT
CCACTGAGCACCAGTCTGTGTGCTTAACATATTAATTCTGGTCACTGGGT
TTTATATGGTATATTATTAAGCATTAGAAGGGTCAAGCATTCCCTCCATT
AAACACGCCCTTAAATTCAAAGCTATGAACAGCCCGGATGGCTATCCTGG
AATAAAACTGTCCCAAAGAGGACCACGTTTAACGCAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAACGTCACTTCTGGCTACATAGTGAGTTTAAGGCCAA
CTTGATTCACATGAGACCATATCTCGCTAACTCCAACCACATATGTATGT
GTGTGTATATATGTATATGTGCATAAAATTACATATATACATATATACAT
ATATACATACATACACATATATATATATATACATACATACATACATATAT
ATATGTATAAAACTTTGCCAGGGATGCAGAATAGGAGGTCTCCTCAGAAA
CTTCAGCTAGCATCTACTCTATAGACAAGAACACTTGGTGAAAGTCTCCG
AGGTTACCTGTATGGACCAGAGAACTGGATATTGTAAAGAAGGGTAAGGG
GCATGGTCTCTCTTCTCTATGTTGTTCTTCTCTTTCTCAAACGCTGGTGC
TGTGACACCTCTAGGACATGAAAGAGAAGTTGAGGTAGACATTCAGTGTC
TCCAGCATCCTGAGTGTGTCCCAGTAAACCCACTCCTGTGCCACTGCCCA
NGTTCATGACACAGACGGACAACTTTGGGATGTGCACCAGGCAGAGTCCA
CAGTGACCAAAAAAACAGATTTTTGGTGGCGCCTGAAAAATTTTTTGGGG
TACCCCCCTGTTATTAAATTATTAACATACCCTAACCCACCCTGTTTGGT
TGTCTCCAAAAATGGCTGGAACAGCCACACTGGCTGTGTAACCTAATTGG
AAAAACTCCCCCTGAAAAATATTTTACACACCCTCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_f23.g1 MSMg01no413_f23.g1 CHROMAT_FILE:
MSMg01no413_f23.g1 PHD_FILE: MSMg01no413_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:02 2005
         (476 letters)



>mm_chr1_75687663_75688537
          Length = 875

 Score =  851 bits (440), Expect = 0.0
 Identities = 471/488 (96%), Gaps = 13/488 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacgtcacttctggctacatagtgagtttaaggccaacttgattcacatgagaccatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aacgtcacttctggctacatagtgagtttaaggccaacttgattcacatgagaccatatc 248

                                                                       
Query: 61  tcgctaactccaaccacatatgtatgtgtgtgtatatatgtatatgtgcataaaattaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcgctaactccaaccacatatgtatgtgtgtgtatatatgtatatgtgcataaaattaca 308

                                                                       
Query: 121 tatatacatatatacatatatacatacataca--catatatatata----------tata 168
           |||||||||||||||||| |||||||||||||  ||||||||||||          ||||
Sbjct: 309 tatatacatatatacatacatacatacatacatacatatatatatacatatatatatata 368

                                                                       
Query: 169 catacatacatacatatatatatgtataaaactttgccagggatgcagaataggaggtct 228
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 369 tatacatacatacatatatatatgtataaaactttgccagggatgcagaataggaggtcc 428

                                                                       
Query: 229 cctcagaaacttcagctagcatctactctatagacaagaacacttggtgaaagtctccga 288
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 429 cctcagaaacttcagctagcatctac-ctatagacaagaacacttggtgaaagtctccga 487

                                                                       
Query: 289 ggttacctgtatggaccagagaactggatattgtaaagaagggtaaggggcatggtctct 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggttacctgtatggaccagagaactggatattgtaaagaagggtaaggggcatggtctct 547

                                                                       
Query: 349 cttctctatgttgttcttctctttctcaaacgctggtgctgtgacacctctaggacatga 408
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 548 cttctctatgttgttcttctctttctcagacgctggtgctgtgacacctctaggacatga 607

                                                                       
Query: 409 aagagaagttgaggtagacattcagtgtctccagcatcctgagtgtgtcccagtaaaccc 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aagagaagttgaggtagacattcagtgtctccagcatcctgagtgtgtcccagtaaaccc 667

                   
Query: 469 actcctgt 476
           ||||||||
Sbjct: 668 actcctgt 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space:   403090
Effective search space used:   403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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