BAC Information

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BAC

Clone NameMSMg01-413J20
Chromosome1 (Build37)
Map Location 167,612,955 - 167,613,469
singlet/doubletsinglet
Overlap geneRcsd1
Upstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1
Downstream geneCreg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413J20.T7 (MSMg01no413_j20.b1)MSMg01-413J20.TJ (MSMg01no413_j20.g1)
ACCAG510106AG510107
length727775
length of high quality
(start - end)		515 (58 - 572)473 (60 - 532)
definitionCHROMAT_FILE: MSMg01no413_j20.b1 PHD_FILE: MSMg01no413_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:21 2005CHROMAT_FILE: MSMg01no413_j20.g1 PHD_FILE: MSMg01no413_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGA
GGATGACATAATACCTTTTGTATCAATGAATTTTAAGAAAAGAATACAAG
CTTGTAAAGATTAAAAATAAATTAATATATTAAGCCAAAGACTGTCACAT
GGAATTGGTAAGGTAAATGGTTGTTGCATGATGACAGAATTCTTCCCATG
AGTTAGTGCTGGCAAATGGACACCGGGCTTGGCCAAATGCAAGTTTCCCA
CCTTCATTACATGTTATAATCTTCTATTGAAAGTCAGATCAAATCGTTCA
TGTGGAGGCATAGGTGAACATCAGCCGCCATATTCGTTTAGATGGGCGTG
GCTTACCCACCCATCCTTCTTTTATGTCATTTGCTTGGTCTCTGAACACC
CCAAGGCCTCTGACCCTGGGGCATGTCATGGACTCAGCCTTCGAAGGTCA
CCACCCTAGGCTCAGCATGAAGCTCACATATTCTGGAGATACATTTTCCA
TCTATACAGAAGTGGGACTTTGCTCTCAGGGTTAAGCTGTGGAATCAGAT
TAGCATCTTCTGTCCATAACACCAACATATCGAGCAGACATAGACCTTGA
AGAGTAAGATCTTGCATGTTGAGTCAGACTCAACAAGTTTTGAAGCCAGT
GCCACTGAGCCAGCAAGTAGCTGAGGAACTGACTTCGCGGTAAATGACAC
TGTGGTATCCTGTAACTCCCAGGATGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCACAGGGAATAAGCCTTACAAATATAATTAACGTGAAAAG
TCCTTTACCTGTAATGGAAGTTGCAGAACTCATCAAAGAATTCATACAGA
AGAGAGATCTTACAAATGCAGTGAATGTGACAAACACTTTCCCTTTAAAA
GCCATCTTAGAAAATATCAGGAAACTCATACAAGAGAGAAAGCTGGCAAT
GTAGTGAATGTGACAAATGTTTTACCCAGAAAGGCTATCTTAGAATTCAC
CAGAGAACTCAGACAGAAGAGAAACATTACAAGTGAAGTGAACGGTACAA
ACCCTTTACCAAGAAAGGCCATCCTAGAACTCATCAGGAATGCATATGCA
AGAGAAACCTTGTAAACGTAGTGAATGCAGAAATCCTTGAGTGTTGTCTC
ATCTCTTAGAATTTATCAGAGTACATACAACAGGGGATCCTTTAAAACAT
GTCACATATAAGGACAATACCTGCATCTCAGTTCTAAGAATACATTTGGA
AATTCATAGTGGGAAGACNAGTTTTCACAGGATATAATGTGACATGTGCT
TTCTCTAAGTCCCACTCAGGGCTGGTGGTGCAATACTTAAGGCTCCCCAC
TACAGAGTGATTACCCCCCTGAGAAATTTGTGGAAGGGGCCAAAAAAAGG
TCCAAACCTAAAAAAATTTCAGCCTTTTTGTTGAGGAAAATAAAAATGTG
CTCGGGGGGAAAACATTCCCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_j20.b1 MSMg01no413_j20.b1 CHROMAT_FILE:
MSMg01no413_j20.b1 PHD_FILE: MSMg01no413_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:21 2005
         (515 letters)



>mm_chr1_167612679_167613593
          Length = 915

 Score =  949 bits (491), Expect = 0.0
 Identities = 509/515 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataataccttttgtatcaatgaattttaagaaaagaatacaagcttgtaaagattaaaaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 791 ataataccttttgtatcaatgaattttaagaaaagtatacaagcttgtaaagattaaaaa 732

                                                                       
Query: 61  taaattaatatattaagccaaagactgtcacatggaattggtaaggtaaatggttgttgc 120
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 731 taaattaatatattaagccaaagactgtcacatggaattggtgagggaaatggttgttgc 672

                                                                       
Query: 121 atgatgacagaattcttcccatgagttagtgctggcaaatggacaccgggcttggccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atgatgacagaattcttcccatgagttagtgctggcaaatggacaccgggcttggccaaa 612

                                                                       
Query: 181 tgcaagtttcccaccttcattacatgttataatcttctattgaaagtcagatcaaatcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgcaagtttcccaccttcattacatgttataatcttctattgaaagtcagatcaaatcgt 552

                                                                       
Query: 241 tcatgtggaggcataggtgaacatcagccgccatattcgtttagatgggcgtggcttacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcatgtggaggcataggtgaacatcagccgccatattcgtttagatgggcgtggcttacc 492

                                                                       
Query: 301 cacccatccttcttttatgtcatttgcttggtctctgaacaccccaaggcctctgaccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cacccatccttcttttatgtcatttgcttggtctctgaacaccccaaggcctctgaccct 432

                                                                       
Query: 361 ggggcatgtcatggactcagccttcgaaggtcaccaccctaggctcagcatgaagctcac 420
           ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 431 ggggcatgtcatggactcagcctgcgaaggtcaccaccccaggctcagcatgaagctcac 372

                                                                       
Query: 421 atattctggagatacattttccatctatacagaagtgggactttgctctcagggttaagc 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtattctggagatacattttccatctatacagaagtgggactttgctctcagggttaagc 312

                                              
Query: 481 tgtggaatcagattagcatcttctgtccataacac 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtggaatcagattagcatcttctgtccataacac 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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