Query= MSMg01no413_m23.b1 MSMg01no413_m23.b1 CHROMAT_FILE:
MSMg01no413_m23.b1 PHD_FILE: MSMg01no413_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:36 2005
(471 letters)
>mm_chr1_173447356_173448226
Length = 871
Score = 812 bits (420), Expect = 0.0
Identities = 459/472 (97%), Gaps = 4/472 (0%)
Strand = Plus / Minus
Query: 1 gagatttcaagagtttctggtccccgagatggttgttcttgggacatgagggctgggaat 60
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 861 gagatttcaagagtttctggtccccgagatggttgtt-ttgggacatgagcactgggaat 803
Query: 61 cctgatacagcagtactcc-tttaagtagcctctcaaacatcctgaagggttcagggagg 119
||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cctgatacaacaatac-ccttttaagtagcctctcaaacatcctgaagggttcagggagg 744
Query: 120 ggagggtgggcactttactcccccactttctcatcttgtttttaaagattaaagtaaaat 179
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaggg-gggcactttactccccaactttctcatcttgtttttaaagattaaagtaaaat 685
Query: 180 ttatttatttattctgtgtgtcatagaattatgtgctgggtggtagtggctgctcatgcc 239
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 684 ttatttatttattctgtgtgtcacagaattatgtgctgggtgggagtggctgctcatgcc 625
Query: 240 tttaattccggttcttgtaattaaatatcagacacactgagaaacccttacctattccca 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttaattccggttcttggaattaaatatcagacacactgagaaacccttacctattccca 565
Query: 300 ttcccagacccaagggccaggccttaaaaaaaaggtccttagcttccagagcttgaatgg 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccccagacccaagggccaggccttaaaaaaaaggtccttagcttccagagcttgaatgg 505
Query: 360 agaaatttataattcaggaaggtctctattgaatatctccaagggcttgtcacagcagtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaaatttataattcaggaaggtctctattgaatatctccaagggcttgtcacagcagtt 445
Query: 420 agcaaatgcgttcactcttgtcccgttcatatttaacttctttttttttaag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcaaatgcgttcactcttgtcccgttcatatttaacttctttttttttaag 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_m23.g1 MSMg01no413_m23.g1 CHROMAT_FILE:
MSMg01no413_m23.g1 PHD_FILE: MSMg01no413_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:36 2005
(423 letters)
>mm_chr1_173382292_173383114
Length = 823
Score = 810 bits (419), Expect = 0.0
Identities = 422/423 (99%)
Strand = Plus / Plus
Query: 1 aggaggtgaaggcaggaggtacagaaattggaggctagcctgctagcctgggctatatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaggtgaaggcaggaggtacagaaattggaggctagcctgctagcctgggctatatga 260
Query: 61 gaccccatcccaaacaaaacaaaaataataattttagttttcttctcccggaaactagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccccatcccaaacaaaacaaaaataataattttagttttcttctcccggaaactagaa 320
Query: 121 ctttaagaatgtgttagtattaaaatattacagagattggatttggaaacaaggttgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttaagaatgtgttagtattaaaatattacagagattggatttggaaacaaggttgctt 380
Query: 181 tgttttgttttcccctgcatttgctatctccccatctgtcattcccatttaaaaattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttgttttcccctgcatttgctatctccccatctgtcattcccatttaaaaattgga 440
Query: 241 tttgtttttttaatataaacctcaacaatagatagtaaagtgaaaggtctgctaggacct 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtttttttaagataaacctcaacaatagatagtaaagtgaaaggtctgctaggacct 500
Query: 301 aatttgtttgtgttctgtgccactcagcaaatacgtagtatcaggcactatgctagcggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttgtttgtgttctgtgccactcagcaaatacgtagtatcaggcactatgctagcggt 560
Query: 361 tgagtaatatttaaattaacaaaccagacgtggtctctgctgtctgggcaattgctggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtaatatttaaattaacaaaccagacgtggtctctgctgtctgggcaattgctggaa 620
Query: 421 agt 423
|||
Sbjct: 621 agt 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
