XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAATAACTTT
CCAGCTCTTCAGAGAGCAGGAACCCCTGGAGTGCTCTCCATGACCTGAAG
CCTGGGTGGTAGCCTTCCTTGGCTTATCAGAAGGCATACAGAAAGCCTTA
TCTCTGTAAGAGAGGGCTTGCTCTCTGATGTCAAGCACTTCCCGACTCTG
CTATCTTGAGTCTCTTACCTGGACTTCTAAATGTTTGGCCTCAGTGTTTA
ATAAGCAAACAGATCAGCATTCCAGAAAAAGAATTTTAGAGATTAACTGA
TTCTATTATTTTTTAAAGGACATTTGAAGCAAGAAAATAATCACACACAG
GCACATACACGCATGTGTATACACACACAAGGGACATGCGCATATACATC
CATTCACAGAATCGAGTTTGTATGTGTATGCTTTCTTTTGCTATGCATGT
TCCTACTTTGTGTCTCTTTTTTTTTTCCATTTTTTATTAGGTATTTAACT
CATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCC
CACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTA
CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATG
GCCGACTAGGCCATCTTTTGAATATATGCAGCTAGAGGCAAGAGCTCCGG
GGTACTGGTTAACTCATATTGTTGTTCCCCCCATAGGGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAAGGCCAGCCTGGTCTACACACCAAGTTGAAGAATGCTGGG
GTTACACAGAGAAACCACATCTCAAAATAAAAAATTAAAAAAGAAAAGAA
AGTAAGAAAAAAGAAAGAAAGAACAAGAGAAAGAAATGGGGGAAACAGCC
TTGAAAGCATTGGCACAGGAGATGACTTTCTGTATAGAACACTGATTGTG
CAGGCAATGGGTCAATAATTAGTAAATAGGATCTCATCAAACAGAAATGC
TTCTGTAAGGTAAATGACACCATCAAAGTGGCAGCCTACAGAATTGGAAA
ATAATTTCACCAACTCCATATCCAAAAGAGGACTAATATGTAAAATATAT
AAAGAATTCAAGAAACTAGATATCACAAAACCATATAATCAAAATAAAAG
TGAGTACAAATCTAAACAGAGGATTCCCAAGAGAGGAATCTCAAGTGGCT
GAGAAACACCTGAAGAAGCCATCAACATCCTTAGCCATCAGAGAAATGCA
AATCAAAACTACTTTATGATTTCATTTACACTTGTCAGAATGGCTAAGAT
TNAAAAACAAAAACAAAAAACCCACAAGTGTTACCTTATATTGGTGAGGA
TTTGGAACAAGAAGAATATTTCTCTATTGCTGGTGGGAGTGCACCTTATA
TAGCAATATGGAAATCAATGACAGTCCTCCAAAGACTGGGAATCGATCTA
CCTCAAGATA

Query= MSMg01no413_n18.b1 MSMg01no413_n18.b1 CHROMAT_FILE:
MSMg01no413_n18.b1 PHD_FILE: MSMg01no413_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:40 2005
         (588 letters)



>mm_chr1_128729357_128730344
          Length = 988

 Score =  725 bits (375), Expect = 0.0
 Identities = 420/435 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaataactttccagctcttcagagagcaggaacccctggagtgctctccatgac 64
           |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattccaataactctcaagctcttcagagagcaggaacccctggagtgctctccaagac 264

                                                                       
Query: 65  ctgaagcctgggtggtagccttccttggcttatcagaaggcatacagaaagccttatctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgaagcctgggtggtagccttccttggcttatcagaaggcatacagaaagccttatctc 324

                                                                       
Query: 125 tgtaagagagggcttgctctctgatgtcaagcacttcccgactctgctatcttgagtctc 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 tgtaagagagggcttgctctctgatgtcaagcacttcccgtctctgctatcttgagtctc 384

                                                                       
Query: 185 ttacctggacttctaaatgtttggcctcagtgtttaataagcaaacagatcagcattcca 244
           |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 385 ttacctggacttgtaaatgtttggtctcagtgtttaataagcaaatagatcagcattcca 444

                                                                       
Query: 245 gaaaaagaattttagagattaactgattctattattttttaaaggacatttgaagcaaga 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaagagaattttagagattaactgattctattattttttaaaggacatttgaagcaaga 504

                                                                       
Query: 305 aaataatcacacacaggcacatacacgcatgtgtatacacacacaagggacatgcgcata 364
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 505 aaataatcatacacaggcacatacacgcatgtgtacacacacacaagggacatgcacata 564

                                                                       
Query: 365 tacatccattcacagaatcgagtttgtatgtgtatgctttcttttgctatgcatgttcct 424
           ||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 tacattcactcacagaattgagtttgtatgcgtatgctttcttttgctatgcatgttcct 624

                          
Query: 425 actttgtgtctcttt 439
           |||||||||||||||
Sbjct: 625 actttgtgtctcttt 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)