Query= MSMg01no413_o24.b1 MSMg01no413_o24.b1 CHROMAT_FILE:
MSMg01no413_o24.b1 PHD_FILE: MSMg01no413_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:47 2005
(472 letters)
>mm_chr1_162848666_162849535
Length = 870
Score = 810 bits (419), Expect = 0.0
Identities = 438/445 (98%), Gaps = 2/445 (0%)
Strand = Plus / Minus
Query: 9 tccttctgtccttctgtccttctgtctccacctcccaagtgctgagataacagggtatat 68
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 tccttctgtccttctgtccttctgtctccacctcccaagcgctgagataacagggtatat 384
Query: 69 attttcctttttttttaacaagaaattcattctttggtgataacactagctacgctatca 128
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 383 attttccttttttttgaacaagaaattcattctttggtgataacac--gctacgctatca 326
Query: 129 gtgtacacgatctggtcatcatttctctcctcctatcacttaaaacattttctccttgtt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtacacgatctggtcatcatttctctcctcctatcacttaaaacattttctccttgtt 266
Query: 189 aggcaggagatactttatgttttatattaatatcctttcccataactacttcttttttta 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcaggagatactttatgttttatattaatatcctttcccataactacttcttttttta 206
Query: 249 attaattaattaattaagccccaagcactcccccttccacagcctcctccctcattgaga 308
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 attaattaattaattaagccccaagcactcccccttccagagcctcctccctcattgaga 146
Query: 309 ccctcttctcatccctccttcccttctcctctgagagggtgcttctccctgatttatctc 368
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cccttttctcatccctccttcccttctcctctgagagggtgcttctccctgatttatctc 86
Query: 369 ccaacgctggcacatcaagtctctgcccgtttacacacatgctctcccattgaggccaga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 ccaacgctggcacatcaagtctctgcccgtttacacacatgctctcccattgaggccaga 26
Query: 429 caaggcagccctgttaggcaattga 453
|||||||||||||||||| ||||||
Sbjct: 25 caaggcagccctgttaggaaattga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 870
Length adjustment: 10
Effective length of query: 462
Effective length of database: 860
Effective search space: 397320
Effective search space used: 397320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_o24.g1 MSMg01no413_o24.g1 CHROMAT_FILE:
MSMg01no413_o24.g1 PHD_FILE: MSMg01no413_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:47 2005
(449 letters)
>mm_chr1_162639600_162640447
Length = 848
Score = 787 bits (407), Expect = 0.0
Identities = 431/443 (97%), Gaps = 9/443 (2%)
Strand = Plus / Plus
Query: 11 acctgcctttacctcccaagtgctaggataaaaggcttgtgccatcactgcctgtctcat 70
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 211 acctgcctttacctcccaagtgctaggataaaaggcttgtgccatccctgcctgtctcat 270
Query: 71 taatcctttaacagcattcttcaaaggaatctagtcactatccattgctaagtacaaatt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taatcctttaacagcattcttcaaaggaatctagtcactatccattgctaagtacaaatt 330
Query: 131 caaggaaatgcttcaaagaaaacaagcatcacagagctgcagattaattaaatgaaagtt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caaggaaatgcttcaaagaaaacaagcatcacagagctgcagattaattaaatgaaagtt 390
Query: 191 acgtgcattttgaaaacatttgcctgt----taccttaggctcaaaggagagacttgttc 246
||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 391 acgtgcactttgaaaacatttgcctgtaaggta----aggctcaaaggagagacttgttc 446
Query: 247 ctgagaaaccaactagctggagaagacaggccctgtccctgtagctttcaccctacacac 306
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 447 ctgagaaaccaactagctggagaagacagaccctgtccctgtagctttcaccctacacac 506
Query: 307 aattgtttgtgtacaaactttctttctttcatagataattttaagtttgagtttccaaat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aattgtttgtgtacaaactttctttctttcatagataattttaagtttgagtttccaaat 566
Query: 367 ttaattactgccatcacaaaattaaaaataaacaactctgacaacatgacaaaattttaa 426
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 567 ttaattactgccatcacaaaattaaaa-taaacaactctgacaacatgacaaaattttaa 625
Query: 427 aatataaaataactgtcttctgt 449
|||||||||||||||||||||||
Sbjct: 626 aatataaaataactgtcttctgt 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 848
Length adjustment: 10
Effective length of query: 439
Effective length of database: 838
Effective search space: 367882
Effective search space used: 367882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
