Query= MSMg01no414_a05.b1 MSMg01no414_a05.b1 CHROMAT_FILE:
MSMg01no414_a05.b1 PHD_FILE: MSMg01no414_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:53 2005
(600 letters)
>mm_chr1_92652711_92653711
Length = 1001
Score = 1106 bits (572), Expect = 0.0
Identities = 589/595 (98%), Gaps = 1/595 (0%)
Strand = Plus / Minus
Query: 5 gaattcagaggtggtcccaagagagagtc-cacatgctactgaccagtcacgttgcatat 63
|||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 799 gaattcagaggtgggctgaagagagagtcacacatgctactgaccagtcacgttgcatat 740
Query: 64 gaatctaaagaaatggtaatggagacagaatggagatgatgagagactacattgctcatc 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaacctaaagaaatggtaatggagacagaatggagatgatgagagactacattgctcatc 680
Query: 124 cttcagaagaaagaaaggggtccccatgctgtgtaaagactctgaggaagcaccaaaacc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cttcagaagaaagaaaggggtccccatgctgtgtaaagactctgaggaagcaccaaaacc 620
Query: 184 tgctgtgtgtctgacactccaccccttggcaccagtaaagtttactggtaaggaatcatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgctgtgtgtctgacactccaccccttggcaccagtaaagtttactggtaaggaatcatg 560
Query: 244 ctcatgccagatgtagtaactgagcctaaaacctctctgtgatgtgaactctggatgtgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctcatgccagatgtagtaactgagcctaaaacctctctgtgatgtgaactctggatgtgg 500
Query: 304 ttctggatgcctaggttcctgattcccatctagttccggaactgatcctggtctttgagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttctggatgcctaggttcctgattcccatctagttccggaactgatcctggtctttgagc 440
Query: 364 atcccccattttttgagcatcccccattgtttgagcatcccccattgtttgagcatcccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcccccattttttgagcatcccccattgtttgagcatcccccattgtttgagcatcccc 380
Query: 424 cattgtttgagcatcccccattgtttgagcatcccccattgtttgagtatcccccattgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cattgtttgagcatcccccattgtttgagcatcccccattgtttgagtatcccccattgt 320
Query: 484 ttgagcatcccccattgtttgagcatcccccattgttgctganagccacgcaagagtttt 543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 319 ttgagcatcccccattgtttgagcatcccccattgttgctgaaagccacgcaagagtttt 260
Query: 544 cacatctttttcaataatgggaaagaatagacaggttctaatgcaatctgatgga 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacatctttttcaataatgggaaagaatagacaggttctaatgcaatctgatgga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space: 584690
Effective search space used: 584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_a05.g1 MSMg01no414_a05.g1 CHROMAT_FILE:
MSMg01no414_a05.g1 PHD_FILE: MSMg01no414_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:53 2005
(550 letters)
>mm_chr1_92439503_92440454
Length = 952
Score = 567 bits (293), Expect = e-166
Identities = 312/319 (97%), Gaps = 2/319 (0%)
Strand = Plus / Plus
Query: 234 agtcaagataccactcaccgctgtttgaatatgaagccctgctacttcgcctcactgaat 293
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agtcaagaccccactcactgctgtttgaatatgaagccctgctacttcgcctcactgaat 493
Query: 294 ataatttaatttttcaggatgaggaccaaactgcagtctttgtctgctct--ttcccagt 351
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 494 ataatttaatttttcaggatgaggaccaaactgcaatctttgtctgctctctttcccagt 553
Query: 352 ttgcatatacgcctattgtgatgcttagagttgtcaacttgatagaatttatagtcaccc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttgcatatacgcctattgtgatgcttagagttgtcaacttgatagaatttatagtcaccc 613
Query: 412 tggaggtggacttctggataaaattgtggaggattaattgatttgtgaagatctgccctc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tggaggtggacttctggataaaattgtggaggattaattgatttgtgaagatctgccctc 673
Query: 472 tgtggagtacactattccctggctgggattctgaactatacagagaaagtactagcatgc 531
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 674 tgtggagtacactattccctggctgggattctgaactatacagagaaagcactagcatgc 733
Query: 532 atacgttagctctcttgag 550
|||||||||||||||||||
Sbjct: 734 atacgttagctctcttgag 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space: 508680
Effective search space used: 508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
