Query= MSMg01no414_c17.b1 MSMg01no414_c17.b1 CHROMAT_FILE:
MSMg01no414_c17.b1 PHD_FILE: MSMg01no414_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:06 2005
(536 letters)
>mm_chr1_34122186_34123120
Length = 935
Score = 924 bits (478), Expect = 0.0
Identities = 524/546 (95%), Gaps = 12/546 (2%)
Strand = Plus / Plus
Query: 1 ggtgacgaggcatcctgttgtcctcttacagtaaattagttattgctcccgtggctcgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgacgaggcatcctgttgtcctcttacagtaaattagttattgctcccgtggctcgta 251
Query: 61 gaacaagtgtaacattcattcactaatcacctgcctcagcctgccatacatacccagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 252 gaacaagtgtaacattcattcactaatcacctgcctcagcctgccatacatacacagggt 311
Query: 121 gaactacaggattttgtcttcccactttctggtaatcatttccttggaggtggtgacaag 180
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 312 gaacgacaggattttgtcttcccactttctggtaatcattcccttggaggtggtgataag 371
Query: 181 gacactgggaccttcctctgactcttcatatattttttttttt----------ctccatc 230
||||||||||||||||||||||||||| | | ||||||||||| |||||||
Sbjct: 372 gacactgggaccttcctctgactcttctttttttttttttttttttttttttgctccatc 431
Query: 231 atctgaccttcctctggttctttgttgctgctctgtcttgtctttgctggtctttgtttt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atctgaccttcctctggttctttgttgctgctctgtcttgtctttgctggtctttgtttt 491
Query: 291 tctgggtaggaacaaaggaatctgagtcttcgctggcccttggaaatggttggcttacag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tctgggtaggaacaaaggaatctgagtcttcgctggcccttggaaatggttggcttacag 551
Query: 351 acacagtcagttgctagctttcaactctgagcacagcggctgttcactgggatggcaaac 410
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 552 acacagtcagttgctagctttcaactc--agcacagcggctattcactgggatggcaaac 609
Query: 411 tgatgtttgttattttctttatagctttattttcttcctttccacttggctttgagtttg 470
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 610 tgatgtttgttattttctttatagctttattttcttcctttccacttggttttgagtttg 669
Query: 471 ttatttttcatcccagcctttctctaccttcataatatgtatccagctgtgtatttgtag 530
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttatttgtcatcccagcctttctctaccttcataatatgtatccagctgtgtatttgtag 729
Query: 531 tggtat 536
||||||
Sbjct: 730 tggtat 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_c17.g1 MSMg01no414_c17.g1 CHROMAT_FILE:
MSMg01no414_c17.g1 PHD_FILE: MSMg01no414_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:06 2005
(250 letters)
>mm_chr1_34259068_34259717
Length = 650
Score = 476 bits (246), Expect = e-139
Identities = 249/250 (99%)
Strand = Plus / Minus
Query: 1 tttggacaggacggccgaggggtcgcttctcttccctccctcctcctttaccttggtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tttggacaggacggccgaggggtcgcttctcttccctccctcctcctttaccttggtctc 391
Query: 61 ttccagctgcctttgcagatttttggggtccaaagcaatgggctcccgtaaatgtttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttccagctgcctttgcagatttttggggtccaaagcaatgggctcccgtaaatgtttgct 331
Query: 121 ggctttggcctcgcaggcctggagcccggagagaaggccgcaggaagcatcttcatactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggctttggcctcgcaggcctggagcccggagagaaggccgcaggaagcatcttcatactg 271
Query: 181 ctggtattgatccaccaggtctttgaggttatttccaagaacactgcactgaaaatcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctggtattgatccaccaggtctttgaggttatttccaagaacactgcactgaaaatcaaa 211
Query: 241 gaagagaagg 250
| ||||||||
Sbjct: 210 ggagagaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
