BAC Information

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BAC

Clone NameMSMg01-414D01
Chromosome1 (Build37)
Map Location 155,267,060 - 155,267,374
singlet/doubletsinglet
Overlap genenone
Upstream geneGlt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058
Downstream gene1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414D01.T7 (MSMg01no414_d01.b1)MSMg01-414D01.TJ (MSMg01no414_d01.g1)
ACCAG510545AG510546
length886812
length of high quality
(start - end)
189 (71 - 259)318 (73 - 390)
definitionCHROMAT_FILE: MSMg01no414_d01.b1 PHD_FILE: MSMg01no414_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:08 2005CHROMAT_FILE: MSMg01no414_d01.g1 PHD_FILE: MSMg01no414_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGA
ATTCAGAAAATACTCTCGTAATAAGTACCTTGCTTTTGGCACGGTGGTGT
TTTCTGGGTTTTGTATGATTCGATGATTGCCATTTCTTTTTTTTTTTTTT
TTTTTTTTTTGGTTTTTTGGTTTTTTTTTTTTCCATTTTTTATTAGGTAT
TTCGCTCATTTACATTTGCAATGCTATACCAAAAGTCCCCCATAGCCACC
CACCCCTTTTCCCCTACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCT
CCTGTACTGGGGCATATAAAGCTTGTTTTTTCTTTGGTACTCTCTTTCCA
GTGATGGTCGACTAATCCATCTCCCCCCGCCTATGCAGCTAGATTTAATA
GTTCCCGCGCTTTTGGTCACCCCCATCTTTTTCTTACCACCTTTTCTCTT
TCTTGATTCCATTCATCTTCCTCTTTTACTATTTTCTTATATACTCTATT
TGTTTACTCCTATCTTTTCTTTTTTAACACCTCTTATTTCTTATCTCACT
CATCTTATCTAGCCACGTCATCCTTTCTCTTTTATAATCACTCTCTATAG
TACCCATGTTCTTCCATCCAGTATTCTCTTTTTTTATATCCCTTCCTGCT
TCAATTATCATACTTCATCATATATAGTTTCATCTATTTTCCATATAATA
CCAACATCATACTCATTCTCATTTACTTTGTATCTTTGTATTTTTATCTA
CTTACTCTAACTTACTACCTTCACCCTCACATTTCTTACTAGCACATCAT
TCTTTATTTTACGCCTTACTATCATTTCTCTATTCCTCTTCACTTTATTA
CACACCATAACTTTCTTTATTTTCTTTCGTTTTATT
CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTTGAACAAACAGAGCAAGAGCCCA
GCTCAGGCGGTGATGAGGCGATGGAATGCGGGAGAGGATGGGGACAGTCT
AAGTGCTGTGAATGCAGAGAATCTGAGTAATATACCTACCTATCCCTCCT
TAGGACAAAGATGCATAGACTAGGAATGTAGGGAAATTGGTCCTTGATGG
ACCGGGTTATGCCAGCCCCAAGAGCCTTGATTGCTAACGTGGTAAAGGTT
AAAAGAAAAAAGATTAAGCTGTACTTATTATGGGAGACATTACTACTGCC
AGAGTATTCAGTATACACTTCTTCCTTGTTGGGAGGGCGATGGTATATGA
AGCTGCCTAAGTACTGACCTGCCCTTCTGCACGATGTGGGGGATCGTAGT
CTAGGTGTACTGCGGTTGTCAGACAGAAGTCTCGCGATCCTGGGAACGGC
TTCTTTAGAGCGCGACGTGGTCGTACATGCGATGAAGCGTGTAAGTTTCC
TTGAGTCTTTCATATGTTTTCCCGTCTCTTCGTTTGGTCTTGTTCGTGCG
TCCGAGCCCCTTCTTCTCTCGTCTATCTTTTTCCGCTTTTCGTGTTTTAT
TATTCGTTTGTCTTTCTTTTAGTGTTTAATCGTGCATTCATTATCTTCTC
TTTTTCCCCCTTCTCTTATACCTTATCTCTCGTTCTTCTAATCCCTATCT
TTTATGTCCTCCTTCCTATTTATTTGTCTACATTCGCCGAGCCTGTTTTA
TTTCGTATTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_d01.g1 MSMg01no414_d01.g1 CHROMAT_FILE:
MSMg01no414_d01.g1 PHD_FILE: MSMg01no414_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:08 2005
         (318 letters)



>mm_chr1_155266860_155267577
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttgaacaaacagagcaagagcccagctcaggcggtgatgaggcgatggaatgcggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttgaacaaacagagcaagagcccagctcaggcggtgatgaggcgatggaatgcggg 260

                                                                       
Query: 61  agaggatggggacagtctaagtgctgtgaatgcagagaatctgagtaatatacctaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggatggggacagtctaagtgctgtgaatgcagagaatctgagtaatatacctaccta 320

                                                                       
Query: 121 tccctccttaggacaaagatgcatagactaggaatgtagggaaattggtccttgatggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctccttaggacaaagatgcatagactaggaatgtagggaaattggtccttgatggac 380

                                                                       
Query: 181 cgggttatgccagccccaagagccttgattgctaacgtggtaaaggttaaaagaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggttatgccagccccaagagccttgattgctaacgtggtaaaggttaaaagaaaaaag 440

                                                                       
Query: 241 attaagctgtacttattatgggagacattactactgccagagtattcagtatacacttct 300
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaagctgtacttagtaggggagacattactactgccagagtattcagtatacacttct 500

                          
Query: 301 tccttgttgggaggg 315
           |||||||||||||||
Sbjct: 501 tccttgttgggaggg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)