Query= MSMg01no414_e21.b1 MSMg01no414_e21.b1 CHROMAT_FILE:
MSMg01no414_e21.b1 PHD_FILE: MSMg01no414_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:18 2005
(207 letters)
>mm_chr1_140262438_140263044
Length = 607
Score = 313 bits (162), Expect = 4e-90
Identities = 186/200 (93%), Gaps = 12/200 (6%)
Strand = Plus / Minus
Query: 5 gaattctcaactttttac-acagacagaaaatgtactgaaaaatgctaagaataattttt 63
|||| |||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 337 gaatcctcaacttttaacaacagacagaaaatgtactgaaaaatgctaagaataa-tttt 279
Query: 64 tctattggtttagatatcctctctataaaataaagacactagaaagcagactcttgccta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tctattggtttagatatcctctctataaaataaagacactagaaagcagactcttgccta 219
Query: 124 gatcctagggattggagagagagagagagagagagagagagagagagagagattaagaga 183
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 218 gatcctagggattg----------gagagagagagagagagagagagagagattaagaga 169
Query: 184 atgggattcctgttgtgttc 203
||||||||||||||||||||
Sbjct: 168 atgggattcctgttgtgttc 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space: 118404
Effective search space used: 118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no414_e21.g1 MSMg01no414_e21.g1 CHROMAT_FILE:
MSMg01no414_e21.g1 PHD_FILE: MSMg01no414_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:18 2005
(406 letters)
>mm_chr1_140050663_140051468
Length = 806
Score = 743 bits (384), Expect = 0.0
Identities = 402/410 (98%), Gaps = 4/410 (0%)
Strand = Plus / Plus
Query: 1 aactgggtacagaagggagcaggtgtactcagcagggctcaggcccaggtactgcagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aactgggtacagaagggagcaggtgtactcagcagggctcaggcccaggtactgcagaat 256
Query: 61 tacacaaaggaagtaggctaagttcagtcttgcctgcagagccattgtattgccagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tacacaaaggaagtaggctaagttcagtcttgcctgcagagccattgtattgccagagtg 316
Query: 121 tcttcattcatgggtaaggtgatcctgggcacaggagtctgtcacacttcccaagtgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttcattcatgggtaaggtgatcctgggcacaggagtctgtcacacttcccaagtgcag 376
Query: 181 agaagcaggaagtaggacacaggtgttctctctctctctctctctctctctctctctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agaagcaggaagtaggacacaggtgttctctctctctctctctctctctctctctctctc 436
Query: 241 tctctctctctctttttcacacacacacacacacacacacacacac----cccttggcaa 296
||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 437 tctctctctctctctctcacacacacacacacacacacacacacacacaccccttggcaa 496
Query: 297 acagttcttgctgtggtcagaggccaggctcgctcaagctgtctgccacaagtgtgcaca 356
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 497 acagttcttgctgtggtcagaggccaggctcactcaagctgtctgccacaagtgtgcaca 556
Query: 357 atgttcaagttgcccagcgacgccagctgtacagtgggagtggttggcct 406
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 atgttcaagttgcccagcgatgccagctgtacagtgggagtggttggcct 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
