BAC Information

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BAC

Clone NameMSMg01-414E21
Chromosome1 (Build37)
Map Location 140,050,859 - 140,262,774
singlet/doubletdoublet
Overlap genePtprc, LOC100042596, Atp6v1g3, LOC100042600
Upstream geneLOC100042567, LOC100043143
Downstream geneNek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414E21.T7 (MSMg01no414_e21.b1)MSMg01-414E21.TJ (MSMg01no414_e21.g1)
ACCAG510633AG510634
length784776
length of high quality
(start - end)
207 (51 - 257)406 (79 - 484)
definitionCHROMAT_FILE: MSMg01no414_e21.b1 PHD_FILE: MSMg01no414_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:18 2005CHROMAT_FILE: MSMg01no414_e21.g1 PHD_FILE: MSMg01no414_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,262,586 - 140,262,774)(140,050,859 - 140,051,268)
sequence
NNNAGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACTTTTTACACAGACAGAAAATGTACTGAAAAATGCT
AAGAATAATTTTTTCTATTGGTTTAGATATCCTCTCTATAAAATAAAGAC
ACTAGAAAGCAGACTCTTGCCTAGATCCTAGGGATTGGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGATTAAGAGAATGGGATTCCTGTTGTG
TTCNCCTTGATTTGTTTTTGTGNTCGCTCGTGTGTTATTTATATAGTAGA
ACGAATGAGGGGAGGGAGCTCTACTGATTTTTTTTTTTGCCGCACCGCGA
CACAGGAAAGGATGGCGTTTTCTCATGCTCTGGGTCACGCGTGGAGTTGC
CCGGGTAGTCAATCGTCTCTGTTCTCCCCCCCTTTATTATTCCTTTCTCC
TAGCTGTCTTATCTAGTAGACCCTACTGCTGAGTGCTTTTCTGTTCATCT
TAAACCATTTGAGTTGCGTCCTTCCCCTCCGGCGTTTATCGATCACCATA
GGCACTGCCTCTTCTCTGCTCATATTGGCGTACCTCCTTCTTTTGATTCT
CTTTCTCCTGTTCTTCATATACTGCGGACCTTACTTCCTCTTCTCTTTTT
CTTTTCCTCTCGTGTCTGTTTTACACTTTTTTTTTTTTTTTTTTCCTTTC
TCTTACTCCAGTTTTTTTCATTTTCTATTCTCTCCTATTTACTACGTGTG
CATTTTCTGCCTCCATATTTTTCTTGTTAGCTGC
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGGGTACAGAAGGGAGCAG
GTGTACTCAGCAGGGCTCAGGCCCAGGTACTGCAGAATTACACAAAGGAA
GTAGGCTAAGTTCAGTCTTGCCTGCAGAGCCATTGTATTGCCAGAGTGTC
TTCATTCATGGGTAAGGTGATCCTGGGCACAGGAGTCTGTCACACTTCCC
AAGTGCAGAGAAGCAGGAAGTAGGACACAGGTGTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCACACACACACACAC
ACACACACACACACCCCTTGGCAAACAGTTCTTGCTGTGGTCAGAGGCCA
GGCTCGCTCAAGCTGTCTGCCACAAGTGTGCACAATGTTCAAGTTGCCCA
GCGACGCCAGCTGTACAGTGGGAGTGGTTGGCCTAAAACAAGGGTTTAAG
ATGCAGTCTTCTAAATCAAGAGGGAAACCTTCCTTTTAGCAGTTCCCTAT
TTGAAATATTTTGATGCTATCCTTACACAGACAGGGCTCTTAAAGACCAG
AAACCTTACTGAACAATATGTAGAGGGACAGCTGGGTTTGTAATATACCC
TAAGAAGAAGGCGGAAATTTCTTTTTTTTTGTTGGGCCCCTAGGTTGAAG
TTCGGAAACCCAAATACCACCGGTAGGCGGCTTTATGGCGCCAAATTCTG
TTATTCCACTGTTCTATTCTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_e21.b1 MSMg01no414_e21.b1 CHROMAT_FILE:
MSMg01no414_e21.b1 PHD_FILE: MSMg01no414_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:18 2005
         (207 letters)



>mm_chr1_140262438_140263044
          Length = 607

 Score =  313 bits (162), Expect = 4e-90
 Identities = 186/200 (93%), Gaps = 12/200 (6%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaactttttac-acagacagaaaatgtactgaaaaatgctaagaataattttt 63
           |||| |||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 337 gaatcctcaacttttaacaacagacagaaaatgtactgaaaaatgctaagaataa-tttt 279

                                                                       
Query: 64  tctattggtttagatatcctctctataaaataaagacactagaaagcagactcttgccta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tctattggtttagatatcctctctataaaataaagacactagaaagcagactcttgccta 219

                                                                       
Query: 124 gatcctagggattggagagagagagagagagagagagagagagagagagagattaagaga 183
           ||||||||||||||          ||||||||||||||||||||||||||||||||||||
Sbjct: 218 gatcctagggattg----------gagagagagagagagagagagagagagattaagaga 169

                               
Query: 184 atgggattcctgttgtgttc 203
           ||||||||||||||||||||
Sbjct: 168 atgggattcctgttgtgttc 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no414_e21.g1 MSMg01no414_e21.g1 CHROMAT_FILE:
MSMg01no414_e21.g1 PHD_FILE: MSMg01no414_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:18 2005
         (406 letters)



>mm_chr1_140050663_140051468
          Length = 806

 Score =  743 bits (384), Expect = 0.0
 Identities = 402/410 (98%), Gaps = 4/410 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgggtacagaagggagcaggtgtactcagcagggctcaggcccaggtactgcagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aactgggtacagaagggagcaggtgtactcagcagggctcaggcccaggtactgcagaat 256

                                                                       
Query: 61  tacacaaaggaagtaggctaagttcagtcttgcctgcagagccattgtattgccagagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tacacaaaggaagtaggctaagttcagtcttgcctgcagagccattgtattgccagagtg 316

                                                                       
Query: 121 tcttcattcatgggtaaggtgatcctgggcacaggagtctgtcacacttcccaagtgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttcattcatgggtaaggtgatcctgggcacaggagtctgtcacacttcccaagtgcag 376

                                                                       
Query: 181 agaagcaggaagtaggacacaggtgttctctctctctctctctctctctctctctctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agaagcaggaagtaggacacaggtgttctctctctctctctctctctctctctctctctc 436

                                                                       
Query: 241 tctctctctctctttttcacacacacacacacacacacacacacac----cccttggcaa 296
           ||||||||||||| | ||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 437 tctctctctctctctctcacacacacacacacacacacacacacacacaccccttggcaa 496

                                                                       
Query: 297 acagttcttgctgtggtcagaggccaggctcgctcaagctgtctgccacaagtgtgcaca 356
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 497 acagttcttgctgtggtcagaggccaggctcactcaagctgtctgccacaagtgtgcaca 556

                                                             
Query: 357 atgttcaagttgcccagcgacgccagctgtacagtgggagtggttggcct 406
           |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 atgttcaagttgcccagcgatgccagctgtacagtgggagtggttggcct 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)