BAC Information

Click to search

BAC

Clone NameMSMg01-414I14
Chromosome1 (Build37)
Map Location 166,531,319 - 166,531,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414I14.T7 (MSMg01no414_i14.b1)MSMg01-414I14.TJ (MSMg01no414_i14.g1)
ACCAG510810AG510811
length763761
length of high quality
(start - end)
502 (74 - 575)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no414_i14.b1 PHD_FILE: MSMg01no414_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:36 2005CHROMAT_FILE: MSMg01no414_i14.g1 PHD_FILE: MSMg01no414_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGC
GGAATTCATAGAGATTTCCAGCGTATATGGTCTGAGGGTGGAGGGCTGGA
CTCAGATGTTTAACATGTGGGCCTTTAGGGGACCCTTCAGATTCAAATGA
TAGCATAGCCTCTTTCCTGGGGACAAGTCTTAAATTGTAATTCCACTTCC
CTGTCCTGGCATTCCCCTACACTGGGGCCCTTCGCAAGACCAAGGGCCTC
TCCTCTCATTGATGTCCCACAAGGCCATCCTCTGCTCTATATGCAGCTGG
AGCCATGAGTCCCTCCATGTGTACTCTTTGGTTGGTGATTTAGTCCCTGG
GAGCTCTGAAGGTACTGGTTGGTTCCTATTGTTGTTCCTTCTATGGTGTT
GCAAACCCCTTCATCTTCTTGGGTCCTTTAACACAGCTGCCACTGTGCAT
TTCCTTACAGTGTAATTATCACCCCTTGGAGAGACCCTTTGCTGGGAACA
TTCTTGGTCAGTTTACTCCACTGCACTCCTCACCAGATTCTGCTTGGAAT
TCTCTGTACCACCATCACGACTCCAAGTGGCTGCCATGGGATAAACAGAA
GGTTGCTTAGCATTTGTCTAAAGTGCGAGCTGACGAATTCTTCCTAACGG
AACCTGGGTTAGAGTTTCTTATGTACTCTCTGAGCCCTTGCCACCCCATG
CTGCGCAGTATGCATTTTCTTCTGAAGAATTCTAATCATCTTGAATCTTT
TTCTTTTTTTTTN
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGAAATTCAGTGCCAGCTGCTGTATGACAGTTTAT
CCAGAGAAGGGGGGTGGACTGTTGAGAACACACATAATGTAAGTAGGATT
TAAGTGTGTTTTCTTCATTCCATAAAACATTCTAGAACTTTAAAAAGCTA
CATTTAGACACAACGTATCAAACTTCATTACTAAAACTTTTAATTTTGCT
CTAGCTTTGTCTGTATTTGGCACTATTGTGCTAGGCTACATCCAATTGCC
CAAACTAGTTGACTGTTGTTTCNNATGATCCTCTGCCCTGCCCACAGATC
ACTTGCACAATTATAAACATCTGGAATAAAGCCGGAAAGAAAATTTTGCA
CTTAGAATAAACATCAATAGGGCTTAGGTTCCAGAGGGGCAAACGGTTCC
TTAATGGTTTCTTTGGTGAGGATTTCTTATTAATTTAGTGAGCAGATGGG
AGCCTTGTGGTCAGTGCATAGGTTTCTAGGAAGTTTCCCTCTGCAGTAGC
AGAGTCAGCTGACCAGTGACTTTCTAGAGTTTCCCAGGGAAGGTGAGGGG
TCTGCCCATGGTATTGGTCCAAAATTAGTGTTAACTTTGATTTTTGGCTG
TGGTCTGCCAATTTTTTTTTTTTTTTTCCGGCAATCTACTTTTTTATTTT
TTCCCCAAACGTGAAATTATGTAAATCTTTATATGAATCTGGCTCACTTT
CTTCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_i14.b1 MSMg01no414_i14.b1 CHROMAT_FILE:
MSMg01no414_i14.b1 PHD_FILE: MSMg01no414_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:36 2005
         (502 letters)



>mm_chr1_166531119_166532020
          Length = 902

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatggtctgagggtggagggctggactcagatgtttaacatgtgggcctttaggggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatggtctgagggtggagggctggactcagatgtttaacatgtgggcctttaggggac 260

                                                                       
Query: 61  ccttcagattcaaatgatagcatagcctctttcctggggacaagtcttaaattgtaattc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcagattcaaatgatagcacagcctctttcctggggacaagtcttaaattgtaattc 320

                                                                       
Query: 121 cacttccctgtcctggcattcccctacactggggcccttcgcaagaccaagggcctctcc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 cacttccctgtcctggcattcccctacactggggcccttcgcaagaacaagggcctctcc 380

                                                                       
Query: 181 tctcattgatgtcccacaaggccatcctctgctctatatgcagctggagccatgagtccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcattgatgtcccacaaggccatcctctgctctatatgcagctggagccatgagtccc 440

                                                                       
Query: 241 tccatgtgtactctttggttggtgatttagtccctgggagctctgaaggtactggttggt 300
           ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 441 tccatgtgtactccttggttggtgatttagttcctgggagctctgaaggtactgattggt 500

                                                                       
Query: 301 tcctattgttgttccttctatggtgttgcaaaccccttcatcttcttgggtcctttaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctattgttgttccttctatggtgttgcaaaccccttcatcttcttgggtcctttaaca 560

                                                                       
Query: 361 cagctgccactgtgcatttccttacagtgtaattatcaccccttggagagaccctttgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagctgccactgtgcatttccttacagtgtaattatcaccccttggagagaccctttgct 620

                                                                       
Query: 421 gggaacattcttggtcagtttactccactgcactcctcaccagattctgcttggaattct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggaacattcttggtcagtttactccactgcactcctcaccagattctgcttggaattct 680

                                 
Query: 481 ctgtaccaccatcacgactcca 502
           ||||||||||||||||||||||
Sbjct: 681 ctgtaccaccatcacgactcca 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)