BAC Information

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BAC

Clone NameMSMg01-414L05
Chromosome1 (Build37)
Map Location 66,701,037 - 66,860,253
singlet/doubletdoublet
Overlap geneRpe, 1110028C15Rik
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneAcadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414L05.T7 (MSMg01no414_l05.b1)MSMg01-414L05.TJ (MSMg01no414_l05.g1)
ACCAG510934AG510935
length787788
length of high quality
(start - end)		527 (43 - 569)484 (74 - 557)
definitionCHROMAT_FILE: MSMg01no414_l05.b1 PHD_FILE: MSMg01no414_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:50 2005CHROMAT_FILE: MSMg01no414_l05.g1 PHD_FILE: MSMg01no414_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,859,802 - 66,860,253)(66,701,037 - 66,701,520)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCCTTTTTAGGTATAGTTTTCAAAGTGGAAGAAGCTTATAAACATCA
TAGACTACAAAGTGCTGAGCTAACTATATTCTGCTCATGCCAGTTATTGC
AGGGTTTTCTGTAGGGAACAGGGACTTCTCCTAAAAGAATACATAAAGAT
ATCTGGAAATATGCTATATTTTGTACTTATGGCTTTCATTAATTCCTATT
TTTTAATACTTTAAAACATTTTAAAAGATGGTGTGACTATCTGAGTGTGT
GGGTTTGTGAGAGTGCAGTGTCTGTGGGAGCCAGAAGAGGGTGTTGGGTC
TCCTGGAGATGGAAGTACAGTGACTGGGAGCTGACCTACCTGGGTGTTGG
GGTTGAGTTTAGGTCCTCGGCAAGAGCAGTATGTGTTATTAACTCCTGAG
CCAACTCTTCAGCCTAGTTCTAGTTCTGTGAGATAAAAATTCAGCCAATA
TGAACTCATTCTTGTTTTTATATTGCATTTTTGCTTTTATATGAACAAGT
TAGAAAAATTGAATTCTCTTATATTTTTAGCATTTACAAGCCCAACTTAG
GCCAGTGAGATGGCTCATTTTTGATGGGTGTTTGCCCCTAATCTGATAAC
CTGAACTGGATCCCTGGAACTTGAGTTATGAAGGGAGAAGGACTTCCCCA
TCCCTTTAAAGTCTCTGCTTTCCGGCTTATAACCCCCCCCCATTGGTTAT
AAAAGGGAAGGACACAAAAAAAGATTCTCACCTTTTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAAGACCCCGGGAATCTCTGCTGAAC
ATTTGCACGGAATTCTATAAGCACTGCGGGCCGAGGCTGAAGATCCTGCA
AAACCTAGCTGGGGAGCCACGGGTCACTGCCCTGGAGCTGCTGGATGTGA
AGTCTCACATGAGGTACCCACGCAAGTGCCTCACCTCTGCCTGGGATGCT
AAGAGCTTAAGCCATGTGTCTGTGTCTGTGTGCTGGGATGAACCAGGAAG
TGGGGGATGCTCTGGGAGTGGGAAGGCTTCCTCCAGGAAAAGGAAGGAGA
TTCTTAGAATAATTTGTTTCCTGTGACTTGGGTACATACCATTTAGATCC
TTCTGGTAAAGTACACATTTTATCTATTAAAGAGATCTCAGAAATAGAAA
ATGTTTTAAAAATGGGAATTCAGTCTGTAACTTACTGTCTGGCAGATTTT
TAAATGTGATCCCAGAGGACCTAGTAGCTGATTTCTAGCAGNTTTTAAAG
GATCATAAGAATTCCTTCAAAGAAAAAGTTCATGGTTAACAAAAGAATTA
CTTTGAATGCTTAATCTATCTACCAAACTAAATGGTCAGTTCTCACCAAC
CTCCTCCGAAACTGCATTATTATTTGTCCAAAAACATTAATTTCCTGAAA
AAGAAGGGGTTTTTTTTTTTTCTTAAATGAACCTCCGAAAGGGCTTTATA
ATGGTCCAGGTGGGTCCCGAGGGCANGGCTACATCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_l05.b1 MSMg01no414_l05.b1 CHROMAT_FILE:
MSMg01no414_l05.b1 PHD_FILE: MSMg01no414_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:50 2005
         (527 letters)



>mm_chr1_66859802_66860728
          Length = 927

 Score =  866 bits (448), Expect = 0.0
 Identities = 451/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcctttttaggtatagttttcaaagtggaagaagcttataaacatcatagactaca 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaattcctttttaggcatagttttcaaagtggaagaagcttataaacatcatagactaca 393

                                                                       
Query: 68  aagtgctgagctaactatattctgctcatgccagttattgcagggttttctgtagggaac 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aagtgctgagctaactatattctgctcatgccagttattgcagggttttctgtagggaac 333

                                                                       
Query: 128 agggacttctcctaaaagaatacataaagatatctggaaatatgctatattttgtactta 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agggacttctcctaaaagaatacataaagatatctggaaatatgctatattttgtactta 273

                                                                       
Query: 188 tggctttcattaattcctattttttaatactttaaaacattttaaaagatggtgtgacta 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggctttcattaattcctattttttaatactttaaaacattttaaaagatggtgtgacta 213

                                                                       
Query: 248 tctgagtgtgtgggtttgtgagagtgcagtgtctgtgggagccagaagagggtgttgggt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tctgagtgtgtgggtttgtgagagtgcagtgtctgtgggagccagaagagggtgttgggt 153

                                                                       
Query: 308 ctcctggagatggaagtacagtgactgggagctgacctacctgggtgttggggttgagtt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ctcctggagatggaagtacagtgactgggagctgacctacctgggtgttggggttgagtt 93

                                                                       
Query: 368 taggtcctcggcaagagcagtatgtgttattaactcctgagccaactcttcagcctagtt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  taggtcctcggcaagagcagtatgtgttattaactcctgagccaactcttcagcctagtt 33

                                           
Query: 428 ctagttctgtgagataaaaattcagccaatat 459
           ||||||||||||||||||||||||||||||||
Sbjct: 32  ctagttctgtgagataaaaattcagccaatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_l05.g1 MSMg01no414_l05.g1 CHROMAT_FILE:
MSMg01no414_l05.g1 PHD_FILE: MSMg01no414_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:50 2005
         (484 letters)



>mm_chr1_66700837_66701720
          Length = 884

 Score =  930 bits (481), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagaccccgggaatctctgctgaacatttgcacggaattctataagcactgcgggccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagaccccgggaatctctgctgaacatttgcacggaattctataagcactgcgggccg 260

                                                                       
Query: 61  aggctgaagatcctgcaaaacctagctggggagccacgggtcactgccctggagctgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctgaagatcctgcaaaacctagctggggagccacgggtcactgccctggagctgctg 320

                                                                       
Query: 121 gatgtgaagtctcacatgaggtacccacgcaagtgcctcacctctgcctgggatgctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtgaagtctcacatgaggtacccacgcaagtgcctcacctctgcctgggatgctaag 380

                                                                       
Query: 181 agcttaagccatgtgtctgtgtctgtgtgctgggatgaaccaggaagtgggggatgctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttaagccatgtgtctgtgtctgtgtgctgggatgaaccaggaagtgggggatgctct 440

                                                                       
Query: 241 gggagtgggaaggcttcctccaggaaaaggaaggagattcttagaataatttgtttcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggagtgggaaggcttcctccaggaaaaggaaggagattcttagaataatttgtttcctg 500

                                                                       
Query: 301 tgacttgggtacataccatttagatccttctggtaaagtacacattttatctattaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacttgggtacataccatttagatccttctggtaaagtacacattttatctattaaaga 560

                                                                       
Query: 361 gatctcagaaatagaaaatgttttaaaaatgggaattcagtctgtaacttactgtctggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatctcagaaatagaaaatgttttaaaaatgggaattcagtctgtaacttactgtctggc 620

                                                                       
Query: 421 agatttttaaatgtgatcccagaggacctagtagctgatttctagcagnttttaaaggat 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 agatttttaaatgtgatcccagaggacctagtagctgatttctagcagtttttaaaggat 680

               
Query: 481 cata 484
           ||||
Sbjct: 681 cata 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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