NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCAGTCATCCAGAGGCATCCAACCTGATCAGTGCCCTCTCCC
TGGCTTCTTTCCTCTTTTCTTCTCCTATGGGAGGAGGTAGCCAGAAAGGC
ACACCTTGTCACCATTCTCTTTCATTTTCTTCTCCAGGACTGGGATAACA
GTTCTTCTCTTCAACCCTTCACTCTCTACTGCCTCTGACTTCAATGTATG
AAGCCATCTGAGGATCATTTGCTGGCTGAGCAATGTTACACAGACTATGG
CCTTGTGGTGACTCATGCTCTTGTGTGTCTCCCTGTGTTTACCATGGGTA
TTCCATTCCAGCTGGATTTCCCTTTCCCCTGGAAACCTATGGCTAAGCTA
TTTCTCCACTTTTTTATTTCTACCCCACATACCCTTTCACCACCAGTGTA
CTCTAAAAGAGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTGACTTTGATACTGAATACTATGGTCCAAATTGCCCCTGTGTCTAAC
TTTCTATATAATCTATTAACTAAAATTGATTTTTTAAATTTTTTATAGCT
GTTAATCATAACATCTCTGGCGAACACATGACAAAAGCAACAAAAAAAGG
TCATTTATGCTCTTATTTTTCTTTCTTTCAGGATCATTATCTAATAGGCC
CAAGTCATAATTTTACTTCTATTATATATTATTTGTTCTGCGCGTCACTA
TTTCTAGGGAAAGTCGAT

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGAAATTCTCACCTGAGGAATACCACCGAATGGCT
GAGAAACACCTGAAAAAATGTTCAGCATCTTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGAAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTCATATTTTTGTCATGGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCTCAACCGGTAAGA
AGGACACATGCTCCACTATATTCATAGCAGCCTTATTTATAATAGTCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAATG
TTATATTTACACAATGGAGTACTACTCAGCTATTAAAAAGGATGAATTTA
TGAAATTCCTAGGCAAAACTGAAGAAGAACAAAGACCATTGGGAACAAAA
CACCCATGGAAGAAGTTACAGAGACAAAGGTTGGAGCTGAGACAAAAGGA
TGAACCACCTAGAGATTGTCTTATCCAGGGATCCATCCCAAATCAGCCTC
TCAGCGGTGACATCGTTGGACCCACTAAGCAGGATTTTGCTGAAAGGACC
CCGAAATAACTGTTTCTTTGTGG

Query= MSMg01no414_n15.b1 MSMg01no414_n15.b1 CHROMAT_FILE:
MSMg01no414_n15.b1 PHD_FILE: MSMg01no414_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:02 2005
         (455 letters)



>mm_chr1_160827176_160828029
          Length = 854

 Score =  864 bits (447), Expect = 0.0
 Identities = 450/451 (99%), Gaps = 1/451 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcagtcatccagaggcatccaacctgatcagtgccctctccctggcttctttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcagtcatccagaggcatccaacctgatcagtgccctctccctggcttctttc 264

                                                                       
Query: 65  ctcttttcttctcctatgggaggaggtagccagaaaggcacaccttgtcaccattctctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcttttcttctcctatgggaggaggtagccagaaaggcacaccttgtcaccattctctt 324

                                                                       
Query: 125 tcattttcttctccaggactgggataacagttcttctcttcaacccttcactctctactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcattttcttctccaggactgggataacagttcttctcttcaacccttcactctctactg 384

                                                                       
Query: 185 cctctgacttcaatgtatgaagccatctgaggatcatttgctggctgagcaatgttacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctctgacttcaatgtatgaagccatctgaggatcatttgctggctgagcaatgttacac 444

                                                                       
Query: 245 agactatggccttgtggtgactcatgctcttgtgtgtctccctgtgtttaccatgggtat 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 agactatggccttgtggtgactcatgctcttgtg-gtctccctgtgtttaccatgggtat 503

                                                                       
Query: 305 tccattccagctggatttccctttcccctggaaacctatggctaagctatttctccactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccattccagctggatttccctttcccctggaaacctatggctaagctatttctccactt 563

                                                                       
Query: 365 ttttatttctaccccacataccctttcaccaccagtgtactctaaaagagaaatgtgtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttatttctaccccacataccctttcaccaccagtgtactctaaaagagaaatgtgtgt 623

                                          
Query: 425 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 455
           |||||||||||||||||||||||||||||||
Sbjct: 624 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space:   375580
Effective search space used:   375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)