BAC Information

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BAC

Clone NameMSMg01-415B04
Chromosome1 (Build37)
Map Location 36,053,967 - 36,054,534
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041544, LOC666283, LOC100041091
Downstream geneEG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415B04.T7 (MSMg01no415_b04.b1)MSMg01-415B04.TJ (MSMg01no415_b04.g1)
ACCAG511218AG511219
length703740
length of high quality
(start - end)
542 (47 - 588)384 (73 - 456)
definitionCHROMAT_FILE: MSMg01no415_b04.b1 PHD_FILE: MSMg01no415_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:20 2005CHROMAT_FILE: MSMg01no415_b04.g1 PHD_FILE: MSMg01no415_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACCATTTCCTTGCATGGCAGATTCTCCCTTGGCTCCCTGCCTT
AGCCTATCTTCTGTTGCTATAATAGAGTGCCTCAGGTTGGGTGATTTATA
AAGAATAAAGGTTTCTTTAGCTCATAGTTCTGGAAGTGCAAGGTCCAGGG
CTCTTTCAGGTTTTGTCCTTATTGTTGGTGGGAACTTTGCAGACTCCTGG
GGCAACACAAGGTAAGCTAGGAGAGAGTGTAGCTTATATTAATGAAGCCA
CTCTCTGGACAGGCCATTAATGTGTTAGTCTAGGAGTGATCTGTCTAATC
CCAAAGACCTCATTCTCAAATATCATGATGATTTGAGATTAAGTCTTCAA
CACAAGAAATCTGGGGGACATATTGGAACATCCTAGAAATGTGGGGGACA
TACCAGAACATACTAGAAATGTGGGGGACATACAAAAACATACTGGAAAT
GTGGGGAACATACTAGAACCATGGAAGTTCTCCACCATGTCTGCTTCAAA
CCCAAGAGGGTGTGGCTTACAAGGTCTTGCCTGGTGAAGCAGGAGTAAAG
AACGATCTGCTCTGTGAATCCTTTTTCACCTTGCCTGCTTGAAAATCATT
TCTCTCTCCAATCTTCCCCATCCTTAGAGGCCAGACNCAGCAGTGCTAGG
AAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTCTCTCCACATCTCTGCAGCATTGG
TTGTCAGTTTGTCTGCTGACCGTCATCCTGACTGGGGTGCGGTGTTACCT
TAAAGGAGTTTTAATTTGCCTGATGGGTAGTGATAGTGAAAGACTTACTG
GCCATTTGTGTTTCTTCTTCTGAAGCCTATTCGTTTTATTTGCCCCTTTG
TTGGTTGTCAGTTTTATGTCCTTGCTACTGAATTTCTGCAGTTCTTTCTG
AATTCTAGATATTCTTCCCCTGCCTGCAGCGTAGCTGAGACCATCTCCCA
TTCTGTGAGCTGGTTGCTCTGTTGGTTGTTTCTGTTGCTGTACAGAAAGT
CTTTGGTTTTGTCTCATCCAACACTTGGGGTTAGTTTCTGTGCTACTGGT
ATTCCTTTAAAAACGCTCTTGCCTATCAGTATCAAATAACATCCCCTGTT
TTCTTACAGGAGTTTCATGCTTTATCTATCTATTTACATTGTCTTATAAC
AACTAATTATATAATTAGTTTTTACATTTTCTATTTCCTTATTGCGCACC
TACAATACGCGTTCGCCTTCTCCTTCCATCAAGGTTTGTGTTCCTTCCTC
GTTCTTTGTCTGCATCTTCGCAACTCTCCGTCTTCTGTTATCTATCTTTC
CGTCGCTTTTCTCCTATTCTATCCTATACCGTCTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_b04.b1 MSMg01no415_b04.b1 CHROMAT_FILE:
MSMg01no415_b04.b1 PHD_FILE: MSMg01no415_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:20 2005
         (542 letters)



>mm_chr1_36053793_36054734
          Length = 942

 Score =  940 bits (486), Expect = 0.0
 Identities = 533/568 (93%), Gaps = 30/568 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaccatttccttgcatggcagattctcccttggctccctgccttagcctatctt 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattccaccacatccttgcatggcagattctcccttggctccctgccttagcctatctt 234

                                                                       
Query: 65  ctgttgctataatagagtgcctcaggttgggtgatttataaagaataaaggtttctttag 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 235 ctgttgctataatagagtgcctcaggctgggtgatttataaagaataaaggtttctttag 294

                                                                       
Query: 125 ctcatagttctggaagtgcaaggtccagggctctttcaggttttgtccttattgttggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctcatagttctggaagtgcaaggtccagggctctttcaggttttgtccttattgttggtg 354

                                                                       
Query: 185 ggaactttgcagactcctggggcaacacaaggtaagctaggagagagtgtagcttatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggaactttgcagactcctggggcaacacaaggtaagctaggagagagtgtagcttatatt 414

                                                                       
Query: 245 aatgaagccactctctggacaggccattaatgtgttagtctaggagtgatctgtctaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aatgaagccactctctggacaggccattaatgtgttagtctaggagtgatctgtctaatc 474

                                                                       
Query: 305 ccaaagacctcattctcaaatatcatgatgatttgagattaagtcttcaacacaagaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccaaagacctcattctcaaatatcatgatgatttgagattaagtcttcaacacaagaaat 534

                                                                       
Query: 365 ctgggggacatattggaacatcctagaaatgtgggggacata------------------ 406
           ||||||||||||||||||||||||||||||||||||||||||                  
Sbjct: 535 ctgggggacatattggaacatcctagaaatgtgggggacatattggaacatcctagaaat 594

                                                                       
Query: 407 ------------ccagaacatactagaaatgtgggggacatacaaaaacatactggaaat 454
                       |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 595 gtgggggacataccagaacatactagaaatgtgggggacatacaaaaacatactagaaat 654

                                                                       
Query: 455 gtggggaacatactagaaccatggaagttctccaccatgtctgcttcaaacccaagaggg 514
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 655 gtggggaacatactagaaccatggaagttctccaccatgtctgcttcaaaccaaagaggg 714

                                       
Query: 515 tgtggcttacaaggtcttgcctggtgaa 542
           ||||||||||||||||||||||||||||
Sbjct: 715 tgtggcttacaaggtcttgcctggtgaa 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)