Query= MSMg01no415_i24.b1 MSMg01no415_i24.b1 CHROMAT_FILE:
MSMg01no415_i24.b1 PHD_FILE: MSMg01no415_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:59 2005
(371 letters)
>mm_chr1_168855367_168856137
Length = 771
Score = 619 bits (320), Expect = 0.0
Identities = 355/368 (96%), Gaps = 6/368 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcacaactttcc--ttagaagggaagaagaaggcactctagaagcagaaaatt 61
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcacaact--cccattagaagggaagaagaaggcactctagaagcagaaaatt 261
Query: 62 ggcagactgagtccttctagccccagagtctggagagctggaagacacaggctgagtgtg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggcagactgagtccttctagccccagagtctggagagctggaagacacaggctgagtgtg 321
Query: 122 gggaggggaaacttgtgccacccgatttcctgctctctcttctctgagtctcaagagtgg 181
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggaggggaaacttgtgccacctgatttcctgctctctcttctctgagtctcaagagtgg 381
Query: 182 ctcaagaagagctccgacagtaaaggtggggatggaaattgaggaaggcattgcttgtta 241
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcaagaggagctccgacagtaaaggtggggatggaaattgaggaaggcattgcttgtta 441
Query: 242 ccatgctagaaatcatagacctggaggcc-tggaacatatcttgcttactggttactcca 300
||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||
Sbjct: 442 ccatgctagaaatcagagacctggaggccctg-aacatagcttgcttactggttactcca 500
Query: 301 tgtgtccatccatttccaagcacacttatattctctgagagaaactaaacttcctgcctg 360
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tgtgtccatccttttcctagcacacttatattctctgagagaaactaaacttcctgccag 560
Query: 361 gagtactc 368
||||||||
Sbjct: 561 gagtactc 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_i24.g1 MSMg01no415_i24.g1 CHROMAT_FILE:
MSMg01no415_i24.g1 PHD_FILE: MSMg01no415_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:59 2005
(288 letters)
>mm_chr1_169047743_169048430
Length = 688
Score = 503 bits (260), Expect = e-147
Identities = 275/280 (98%), Gaps = 2/280 (0%)
Strand = Plus / Minus
Query: 1 attgagtcctgtgacgccccaggtttcatggttgtacaatcagctctggacggggtattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 347 attgagtcctgtgacgccccaggtttcatggttgtacaatcagctctggacagggtattt 288
Query: 61 cttaggtttgatcataggctctaggaagctctgcccctttcgcatggctctcaatcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cttaggtttgatcataggctctaggaagctctgcccctttcgcatggctctcaatcttta 228
Query: 121 tcttt-tagtcttttttaaatatcactcatatatttagtattattaatatataatattac 179
| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 t-tttgtagtctttttaaaatatcactcatatatttagtattattaatatataatattac 169
Query: 180 taataaataagattaacaataatattatagcattatttatatactatatttatatttacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 taataaataagattaacaataatattatagcattatttatatactatatttatatttacc 109
Query: 240 tataatacattatattatattatattatattatattatat 279
||||||| ||||||||||||||||||||||||||||||||
Sbjct: 108 tataatatattatattatattatattatattatattatat 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
