XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
ATATATCCTATTTTATAACTGAATAGTACACAGTCTTTTATTCTCTACAC
CATGTCCAGTTGTACATCTCTGTACTAATTGCCATCTACTGCAAATAGGA
GCATCACTGACGAAATTTTAGAAATACATTAATCTATGGGTATAACAATG
TCATTAGAGTCAAGTTAGTACTATGTTCATTAGCAGAGTAATAGTAGCAG
GTTTTCCCTTAGGACCCATACCACCTGTCTACCCACAACACTGTTTTTCA
GAGTTAGTACCATCAGTGATACTGAAACTAGACAGTGATCTAATGAGAAA
GGGAGTTGGAGGGGGAGAGGGAGGGGAGNNNNNNNNNNNTNNNNNNNNNN
TTTNNNNNNNNTTTTNNTTTTTTTTTTTTNTTTTTTTTTTTNTNTTTTTT
TNTTTTTTTTNTTTTTTTTTTTTTTTTTCCTTTTTCCTTTTTTTCTTNTT
TTTTTTTTTCCTTCCCCTTCTCTTCCCTTCTTCTTTCTTTCCCTCCTTTC
TCCTCCTCTCNCCTCCTTTTTTTCCTCCTCTTCCCTCCCTCCTCTCTCTC
TTTCTCTCTCCTCCCCTTCTTTTCCCCCTCCCGCTTTTCCCTTCTCTCCT
CCTCTTCTTCTCCTTTCTCCCTCTTCTTCTCCCCTTCCCCTTTTTCTCTT
CTTTTTTTCCCCTTTTCTCCTTCCCCCCTCTCTTTCCCTTCTCCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCTAAGTTATCTTCAGTAGTAACTTACAACAG
CCTAAGCTATGTCAGAATGATATTGGAGCCTATAATTCCAGAAGACTTAT
AGCAAACTTTCCTGTAGCCCAGGGATAGATAGGAGTTCCAGAACGGTGTT
TTAGCTAAAGTCCATTGTGAAGTTCTTGTAGTCTTAAGGATTCATGTTGT
TATTTCTTATTTGTTTGGTTTTTTTTTCTGCTTATGAGTTATGTGTGTGA
GAGAAAGATTTTTTAATGATTTTTTCACTTAAAAATATATTTATTTTTAT
ATTTTAAATTGTGTGTATATAAAGGTATTTTTGAGAAGGTATGTGCAATT
GAATAAAGGTTTCTTCAGAGTTTATAGGCATTGGAGTCCCTGTCGCTGAA
GTTACAGAAAGTTTAATGTGGAAGCTGTCAATCAAACTTCATGAAGGAGA
GTTAAAAGACATAGGGATTCAGGCGGACGGGAAATCACCAGTTAGAATCC
TGATATGTAGTTCTCTGCTTCAATCATACTTGCACAGGATAATCGTCCCT
ATCACCCCGGTTTTGCTCATTTATTTTCTCACTATTCCTTTTGCCTTCGT
TCACTTGTCCATCTCCATCTCTTAGGACCCCTCACCGTTCGTTCTTCTGC
CTTGCCTTCTCCTTTCCCCTCCCTCTTTCCGGTTTTTCTTTCTCCCCCC

Query= MSMg01no415_l15.g1 MSMg01no415_l15.g1 CHROMAT_FILE:
MSMg01no415_l15.g1 PHD_FILE: MSMg01no415_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:11 2005
         (414 letters)



>mm_chr1_8644081_8644894
          Length = 814

 Score =  748 bits (387), Expect = 0.0
 Identities = 410/427 (96%), Gaps = 17/427 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctaagttatcttcagtagtaacttacaacagcctaagctatgtcagaatgatattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttcctaagttatcttcagtagtaacttacaacagcctaagctatgtcagaatgatattgg 251

                                                                       
Query: 61  agcctataattccagaagacttatagcaaactttcctgtagcccagggatagataggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agcctataattccagaagacttatagcaaactttcctgtagcccagggatagataggagt 311

                                                                       
Query: 121 tccagaacggtgttttagctaaagtccattgtgaagttcttgtagtcttaaggattcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tccagaacggtgttttagctaaagtccattgtgaagttcttgtagtcttaaggattcatg 371

                                                                       
Query: 181 ttgttatttcttatttgtttggtttttttttctgcttatgagttatgtgtgtgagagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgttatttcttatttgtttggtttttttttctgcttatgagttatgtgtgtgagagaaa 431

                                                                       
Query: 241 gat-----tttttaatgattt--------tttcacttaaaaatatatttatttttatatt 287
           |||     |    ||||||||        |||||||||||||||||||||||||||||||
Sbjct: 432 gataaacat----aatgatttcatttatttttcacttaaaaatatatttatttttatatt 487

                                                                       
Query: 288 ttaaattgtgtgtatataaaggtatttttgagaaggtatgtgcaattgaataaaggtttc 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttaaattgtgtgtatataaaggtatttttgagaaggtatgtgcaattgaataaaggtttc 547

                                                                       
Query: 348 ttcagagtttataggcattggagtccctgtcgctgaagttacagaaagtttaatgtggaa 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttcagagtttataggcattggagtccctgtcgctgaagttacagaaagtttaatgtggaa 607

                  
Query: 408 gctgtca 414
           |||||||
Sbjct: 608 gctgtca 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)