Query= MSMg01no415_n04.b1 MSMg01no415_n04.b1 CHROMAT_FILE:
MSMg01no415_n04.b1 PHD_FILE: MSMg01no415_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:18 2005
(522 letters)
>mm_chr1_186259823_186260745
Length = 923
Score = 870 bits (450), Expect = 0.0
Identities = 498/524 (95%), Gaps = 22/524 (4%)
Strand = Plus / Plus
Query: 5 gaattcctgattc---cacaactaaaggggaaagagatgtttcactcctgattacataag 61
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctga--cacacacaactaaaggggaaagagatgtttcactcctgattacataag 262
Query: 62 attcaattcatagttgtgtggtccatgtgttcaaatgggctccatggtggcaagaaccag 121
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attcaattcattgttgtgtggtccatgtgttcaaatgggctccatggtggcaagaaccag 322
Query: 122 gactagaagaaggctgttcattttgtcacaggcaggatgcaaaaagagaagtcttcaaag 181
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gactagaagaaggctgttgattttgtcacaggcaggatgcaaaaagagaagtcttcaaag 382
Query: 182 cagagtttctggt--ctccgattccctctagtctgtccctacctctcagactttctacaa 239
||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 cagagtttctggttgct--gactccctctagtctgtccccacctctcagactttctacaa 440
Query: 240 actcccagaattattccactattgatgaccatgtggtcaaaacacatgtatgggaggaaa 299
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccca-----------ctattgatgaccatgtggtcaaaacacatgtatgggaggaaa 489
Query: 300 ttcccatttaagctgtaactgagacattgcataagaaaactggaaagcacattagcatct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttcccatttaagctgtaactgagacattgcataagaaaactggaaagcacattagcatct 549
Query: 360 gtcc-accagtgggagaaggatggaaggctgtcagaggatctagttgtaccctcctccca 418
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 -tcccaccagtgggagaaggatggaaggctgtcagaggatctagttgtaccctcctccca 608
Query: 419 aacagctgggattcattttaaggaccattttgcttccttcaccatgacgatttcctcata 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aacagctgggattcattttaaggaccattttgcttccttcaccatgacgatttcctcata 668
Query: 479 ttgtctcctcaacctgtgtcaaggaaaaaacagtccatgtcctc 522
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttgtctcctcaacctgtgtcaaggaaaaaacagtccatgtcctc 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_n04.g1 MSMg01no415_n04.g1 CHROMAT_FILE:
MSMg01no415_n04.g1 PHD_FILE: MSMg01no415_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:18 2005
(501 letters)
>mm_chr1_186381576_186382476
Length = 901
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%)
Strand = Plus / Minus
Query: 1 tcagaggaaacaaagtgaatcccctagttcctgaatgctgacgatgacagttccttttct 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 628 tcagaggaaacaaagtgaatcccctagttcctgaatgctgacgatgacggttccttttct 569
Query: 61 tccatattttgggtataccccgtccccagtgtagcattctatttatttccatcatctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tccatattttgggtataccccgtccccagtgtagcattctatttatttccatcatctgag 509
Query: 121 aatgaaaatgaggtagcttgggaaagcataggaaacaagggagctttccagggagagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aatgaaaatgaggtagcttgggaaagcataggaaacaagggagctttccagggagagcta 449
Query: 181 ggtcttggggggtttctgtgcaggtctaacctgggatagagttaaatggcttctgcagcc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggtcttggggagtttctgtgcaggtctaacctgggatagagttaaatggcttctgcagcc 389
Query: 241 catggagtcagcaatagggctatattatcaattgcagtaactttagatgctatttactgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catggagtcagcaatagggctatattatcaattgcagtaactttagatgctatttactgg 329
Query: 301 gtgcttttgattggaaggctgtgtgctttacatcctcattgctctgaagagtagatgact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgcttttgattggaaggctgtgtgctttacatcctcattgctctgaagagtagatgact 269
Query: 361 tgtttttctttgaattgtactaagaggcaaagagaatggaatctgtcgctctaccatcag 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 tgtttttctttgaattgtactaagaggcaaagagaacggaatctgtcgctctaccatcag 209
Query: 421 gattcatccttgctggctctgagacctggggaaagttgcctgctcatcagttgcttcatt 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 208 gattcatccttgctggctctgagacctggggaaagttgcctgctcatccgttgcttcatt 149
Query: 481 tctctcatctgcggaatgggt 501
|||||||||||| ||||||||
Sbjct: 148 tctctcatctgcagaatgggt 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
