BAC Information

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BAC

Clone NameMSMg01-415N05
Chromosome1 (Build37)
Map Location 42,717,208 - 42,717,601
singlet/doubletsinglet
Overlap gene2610017I09Rik
Upstream geneLOC383634, LOC666582
Downstream genePou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415N05.T7 (MSMg01no415_n05.b1)MSMg01-415N05.TJ (MSMg01no415_n05.g1)
ACCAG511792AG511793
length745754
length of high quality
(start - end)
244 (65 - 308)394 (67 - 460)
definitionCHROMAT_FILE: MSMg01no415_n05.b1 PHD_FILE: MSMg01no415_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:18 2005CHROMAT_FILE: MSMg01no415_n05.g1 PHD_FILE: MSMg01no415_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAGTTTCCGCAGATGCCGCTGATGGTAAGTCCCTGATTATAGTGATATT
GTCTGGTCCTATCTTTTGGCTCTTACATTCTTTCCACTCCCTTTTCAGTG
GTCCCTGAGCCCTAGGAAGTATGGTATTGTCTTAGGTAAGGTTTCTACTG
CTGTAACACAACACCAGGAACAAAAAGCAAATTAGGAAGGAAAGGGGTAA
TTCAGCTTTCCCTTCCAGATCATAGCTCATCATTGGAGGAAATCAGGACA
GGAACTCAAGTATGTTTGGACTATGGAGGCAGGAGCCGATGCAGAAGCCA
TGGAAGGGTGCTGCTTACTTGCTTGCTTCACATGGTTTGCTCAGTCTGCT
TTCTTATAGAATCCAAGACCACCAGCCCAGGGATGGCACCCCCACAGTGG
GCTAGGACCTATCCCATTGACCACTAATTGATATCCATGCCTTACAGCTG
GATCTCACAGAGGAATTTCCTCAACTGTGTCTCCTCTTCTTCTGATGACT
CTTCCTTTGGCTCCTGCTCACCTATTAATTTCCCCCATCTTCTGTACATT
CGAACTAACTAGGGCTGAAATCCCCATGTAAACTCCACTCCCCTTCCCTT
TCCCGCTTTCTTTCTTATCTTTCTTCTCTATTACCGCCATATATATTTTC
CTTCTTTTTTGCCCACAAGGAACCCCCCCCTTTTCCTTATCCTTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTGACCTCTGAGGTGAGGAGATTCTCTCACCT
CAGCCTCCGCGTCCCTAGAAGTTGGTACCCTGAATTGACAGCACCACATC
TGACTTAAAAAAATAATTAATTTTTTAAAGCAATGGCGCCCTCCCATCTA
GCAGAATGCACAGTAGGTGTGCATAGCCTCCATTTTATATGCCATTGTAA
GGATGAGTTCTGTTTGAAACCTACAGAGCAAAGCACACGTATGTGGTTCA
AACCTATTATCTGGCAGGGTGAGAACAGAAGGTACTGACTGAGGAGGCAT
AAGTTACCCTTTGCCAGACAATAGACGGAGAAAGGAGTAAGGAGGAGTGG
GAAAGGGTCCAGGTGGAAAGGTCGATGACTTTGGGAGCATCGAGGGAAGG
AGGCAAGGTTAGAGAATGGCAATTGGACGGTAGATCTACCATGAAGGCGT
GAACATAGAGATAGGAAGCTAAGATTCTGGGATGTATATCAGGCAGGCTA
TCCTCCTGAACCCTGTGTGAACATCAGAGCGTTCTAACCGCAACATCTCT
TGCTACTCCTACCGCTTTTTCCTCTTTTATCTTCTCCACCTTTCCCTTCT
CCCTTCTTCCCTCTTCCTTCTCCATCCCCTCTCTCCCCTTCCTCTCCCTT
CTTCTTCATTTCTTTTTCTTTTCCCCTTCCCTTCCCTTTTTTTTCTTCTC
CCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_n05.g1 MSMg01no415_n05.g1 CHROMAT_FILE:
MSMg01no415_n05.g1 PHD_FILE: MSMg01no415_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:19 2005
         (394 letters)



>mm_chr1_42716895_42717688
          Length = 794

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgacctctgaggtgaggagattctctcacctcagcctccgcgtccctagaagttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctctgacctctgaggtgaggagattctctcacctcagcctccgcgtccctagaagttggt 648

                                                                       
Query: 61  accctgaattgacagcaccacatctgacttaaaaaaataattaattttttaaagcaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 accctgaattgacagcaccacatctgacttaaaaaaataattaattttttaaagcaatgg 588

                                                                       
Query: 121 cgccctcccatctagcagaatgcacagtaggtgtgcatagcctccattttatatgccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cgccctcccatctagcagaatgcacagtaggtgtgcatagcctccattttatatgccatt 528

                                                                       
Query: 181 gtaaggatgagttctgtttgaaacctacagagcaaagcacacgtatgtggttcaaaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtaaggatgagttctgtttgaaacctacagagcaaagcacacgtatgtggttcaaaccta 468

                                                                       
Query: 241 ttatctggcagggtgagaacagaaggtactgactgaggaggcataagttaccctttgcca 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 taatctggcagggtgagaacagaaggtactgactgaggaggcataagttaccctttgcca 408

                                                                       
Query: 301 gacaatagacggagaaaggagtaaggaggagtgggaaagggtccaggtggaaaggtcgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gacaatagacggagaaaggagtaaggaggagtgggaaagggtccaggtggaaaggtcgat 348

                                             
Query: 361 gactttgggagcatcgagggaaggaggcaaggtt 394
           ||||||||||||||||||||||||||| ||||||
Sbjct: 347 gactttgggagcatcgagggaaggaggtaaggtt 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)