BAC Information

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BAC

Clone NameMSMg01-415N10
Chromosome1 (Build37)
Map Location 134,515,905 - 134,516,262
singlet/doubletsinglet
Overlap geneNfasc
Upstream geneLOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2
Downstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415N10.T7 (MSMg01no415_n10.b1)MSMg01-415N10.TJ (MSMg01no415_n10.g1)
ACCAG511801AG511802
length721727
length of high quality
(start - end)
359 (63 - 421)240 (68 - 307)
definitionCHROMAT_FILE: MSMg01no415_n10.b1 PHD_FILE: MSMg01no415_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:19 2005CHROMAT_FILE: MSMg01no415_n10.g1 PHD_FILE: MSMg01no415_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTGCGGCCGCTATACGAATACTATTCAGAGAGGATCCGCGGAATTC
TAAGATTCGACTCTGCTCTGTGGGCTCAGCTAACCAGCCACCTGCAGGCT
GGGTTGAGCCATCTTCCTGAGGGTAAATGATCAGGGCTGGGACTTGAGGG
GTTGTCCTCCTACAGGAGCCCACCTGGCTTCTCGTGCCTGGCCTGTGCCA
TCTACCTCTGCCTGCCTTGTCTTTCAGCTGCTCCATACTGGCTGGATGAG
CCCAAGAACCTGATCCTGGCTCCTGGGGAAGATGGGAGGCTGGTATGCCG
AGCCAATGTTTTTCCGAAGCCGACCGTGCAGTGGATGGTGAATGGAGAGC
CTTTACAATGTGAGTCAAGCTGCTGTCCCACTCTGTCTGTTCCCACCCCC
CGCCCCAGAGAATTTGTTGGCGAGCCAGATGTCCCCACAGCGAATGAGGT
GAATGGCTCATTGGCATTTCTTCCCCTACAGTGCTTCCATAAGCAGAATG
CCTTATTCTTCTGACAGAACACGATGCTAAGTATCCTAAAGCCTGTGCCT
ACGCTCCTGCGCCTATAGATCTGTGCCTCCTCCCCGGTCCCCCTAACTTT
TTTTTTCTGCTCCCTCACTCCAACATACCTCCTTTCCCTCCTCTTCCCTT
TTTCTCTTCCCCTTTTTTTTTTCTTTCTTCTCCCATCCTTCTTTCTTCCC
TCTATCTCCTTCCCTTCCTTN
ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGACACAAAGAAATCACTTCCCATTGGGCAGCTCATAACTGCCTGG
AACGTCAGCTCCAGGGGATTGGACACCCTCCTCTGGCCTCTGCAGGTACT
GCACTCACATGTACATACTCAGGTAAGTATGTGTATACACACACACATAC
ACACACACACACACACACACACACACTCTTTAAGAACAGAGTTCCTATTT
TCTCAGTCATTTGCCTCTTCCCTGATAATCAGCCAAATATAGACTTTTCC
TTTTTTTCCTAATTGAAGTCCTGTGCCAGCAACTTCTAGTTTTTATTAGA
GATAAAATTCTTCACAATTCATTATGACTTGCTTTTATAATAAAACTGAA
GGAGAAAGCTGTTTAAGAAAGTAAATAATACAGAGGCATATAAGAATTTA
AGTCAGATCATTTGCTTTTCCATCTGTTTTCTCTTTGTCTGTGAACCTCG
CAAGTGGTAGAATAAAGCTTTAGATTCCTATTGAGATGAGCTTCTATCCA
TTCTCTGTGCTTCTGGGACAAAGCTCCGTGTCAGCCCCACCCAGCTTCTT
AGGACAAAACCCATGGCCTATAAGCCCATTTACTTGATGCTCCTCACCTG
GAATAAAATTTGTCATCACCCAGATTCTTATTATTTATCATCCTATTCCT
TATTGCCTTACTTTGTTTTCCCAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_n10.b1 MSMg01no415_n10.b1 CHROMAT_FILE:
MSMg01no415_n10.b1 PHD_FILE: MSMg01no415_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:19 2005
         (359 letters)



>mm_chr1_134515705_134516463
          Length = 759

 Score =  640 bits (331), Expect = 0.0
 Identities = 351/363 (96%), Gaps = 10/363 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctctgtgggctcagctaaccagccacctgcaggctgggttgagccatcttcctgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctgctctgtgggctcagctaaccagccacctgcaggctgggttgagccatcttcctgagg 499

                                                                       
Query: 61  gtaaatgatcagggctgggacttgaggggttgtcctcctacaggagcccacctggcttct 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 498 gtaaatgatcagggctgggacttgagaggttgtcctcctacaggagcccacctggcttct 439

                                                                       
Query: 121 cgtgcctggcctgtgccatctacctctgcctgccttgtctttcagctgctccatactggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgtgcctggcctgtgccatctacctctgcctgccttgtctttcagctgctccatactggc 379

                                                                       
Query: 181 tggatgagcccaagaacctgatcctggctcctggggaagatgggaggctggtatgccgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tggatgagcccaagaacctgatcctggctcctggggaagatgggaggctggtatgccgag 319

                                                                       
Query: 241 ccaatg-----tttttccgaagccgaccgtgcagtggatggtgaatggagagcctttaca 295
           ||||||          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccaatgggaac-----ccgaagccgaccgtgcagtggatggtgaatggagagcctttaca 264

                                                                       
Query: 296 atgtgagtcaagctgctgtcccactctgtctgttcccaccccccgccccagagaatttgt 355
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 263 atgtgagtcaagctgctgtcccactccgtctgttcccaccccccgccccagagaatttgt 204

              
Query: 356 tgg 358
           |||
Sbjct: 203 tgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)