XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGATTATGATGTTTGCCTCCCTCCAGCTGGCAACGAGCTGTGATAAATG
TCTCCTCAAGTCTCTGTCTCCCACACTTTGCCTCTTTTCTCTCCGCTCCC
CAAGCTGCACCTGGAGCTTCTGGAAGAATTCTTCCCTGCTGCTGTCACTC
CCTCCTTCCCAAACCCCTACAATCAAGGTCCCCAGGAATTGGGTGTCACC
TTGATTGCAGGCTTGCCGGCTGGCTAAGCATCCTGAGAGTTAGCTCTTTA
ATCTTATCAGCAGGGGAGAGAGATTTTCCAGTGTTAAACAGCAAGAGCCT
TGTACAAAGTTCCAAGTGTAATCTAGGAAAAGTGCTGAAAAATATGTAGA
GCGATGAGAATACTAGGATTTACGGAGACCTGGAATTATTATAGATGTCC
TTCTCCATTGCCAGACACCAACTCCCCAGGAAAAAACACATCTGCCGTCA
TTTTCAAATCAGCTGGCTAATCTTAGAGTGCCGATTTTAACTCTTGTTTT
TTATTCACTGATGAACACTTACAATATGCGAGTATTCTTTCAAAACACAG
TCTTGGGACTGAAGAGATGGCCAGATGGTCAATAGTGCGCACTTGCCTGG
GCTGGACCTAATCCCCTGCTATATGTAGCCCACGAGCAGCTTGGCTCCTC
TGTGGGCCCCCCCACACTGGG

ACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCAAACTCAG
AAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAAGCATGCGCCA
CCATGCCCGTCAGGATTCCACTCTTAATATCATGATTTTGAGGACTAGGT
TTCAACAGATGAATGAGGGGCAGGCAGTAAACATTCAGGACTGTCTTAGT
TTTGTTTACTATTGCTGTGAAAAAAATACTTGGAAATAGCAAGTCAGGGA
GAAAACTTTTTTTTTTTTAGCTCTCAATTCCAGATTACTATACATGAAGC
AGGAAAGTGACAACAGTAGGAATCTGAACTGCTAGTCACATCACAGTCTA
GAGCAGGGAACAAAACGTGCTTAGCTCTTTCTCTCCTTTTAGGCAGTCCA
GGGCCCAAATCCAGGGAATGACACCACCCACAGTAGTCTGTGTCTTCTTG
TCTCACCCTAACCAACACCTCTCCCCCTAACACACGCAGATGTGCCAACA
GGTCACCCTGAATTAGACAGTCCCTCAATGAAACTTTCTTCCTAGGTAAT
TCTAGATTGTGTCAAGNTGACAATCAAAATTAACCATTACAAGGCCATAA
AGATTTTTATTAATCTGGTAATTCATTTTAAAATTTTAGAGGAATAATTC
TCCTTTCAGAAAGGGGCTAATTTTTTTT

Query= MSMg01no415_o02.b1 MSMg01no415_o02.b1 CHROMAT_FILE:
MSMg01no415_o02.b1 PHD_FILE: MSMg01no415_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:23 2005
         (562 letters)



>mm_chr1_123602258_123603220
          Length = 963

 Score = 1019 bits (527), Expect = 0.0
 Identities = 551/559 (98%), Gaps = 1/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgattatgatgtttgcctccctccagctggcaacgagctgtgataaatgtctc 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaattcatgagcatgatgtttgcctccctccagctggcaacgagctgtgataaatgtctc 704

                                                                       
Query: 65  ctcaagtctctgtctcccacactttgcctcttttctctccgctccccaagctgcacctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctcaagtctctgtctcccacactttgcctcttttctctccgctccccaagctgcacctgg 644

                                                                       
Query: 125 agcttctggaagaattcttccctgctgctgtcactccctccttcccaaacccctacaatc 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 643 agcttctggaagaattcttccctgctgctgtcaccccctccttcccaaacccctacaatc 584

                                                                       
Query: 185 aaggtccccaggaattgggtgtcaccttgattgcaggcttgccggctggctaagcatcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aaggtccccaggaattgggtgtcaccttgattgcaggcttgccggctggctaagcatcct 524

                                                                       
Query: 245 gagagttagctctttaatcttatcagcaggggagagagattttccagtgttaaacagcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gagagttagctctttaatcttatcagcaggggagagagattttccagtgttaaacagcaa 464

                                                                       
Query: 305 gagccttgtacaaagttccaagtgtaatctaggaaaagtgctgaaaaatatgtagagcga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gagccttgtacaaagttccaagtgtaatctaggaaaagtgctgaaaaatatgtagagcga 404

                                                                       
Query: 365 tgagaatactaggatttacggagacctggaattattatagatgtccttctccattgccag 424
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 403 tgagaatactaggatttaccgagacctggaattattatagatgttcttctccattgccag 344

                                                                       
Query: 425 acaccaactccccaggaaaaaacacatctgccgtcattttcaaatcagctggctaatctt 484
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 343 acaccaactccccaggaaaaaacacatctgcggtcattttcaaatcagctggctaatctt 284

                                                                       
Query: 485 agagtgccgattttaactcttgtttttt-attcactgatgaacacttacaatatgcgagt 543
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 283 agagtgccgattttaactcttgttttttaattcactgatgaacacttacaatatgcaagt 224

                              
Query: 544 attctttcaaaacacagtc 562
           |||||||||||||||||||
Sbjct: 223 attctttcaaaacacagtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space:   526056
Effective search space used:   526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)