Query= MSMg01no416_a15.b1 MSMg01no416_a15.b1 CHROMAT_FILE:
MSMg01no416_a15.b1 PHD_FILE: MSMg01no416_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:35 2005
(539 letters)
>mm_chr14_122557776_122558717
Length = 942
Score = 806 bits (417), Expect = 0.0
Identities = 506/537 (94%), Gaps = 5/537 (0%)
Strand = Plus / Minus
Query: 7 aattcaaagactc--tggcacatagtttaaaaggccaataccatgggaataatgaggtca 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 742 aattcaaagactcagaggcacatagtttaaaaggccaataccatgggaataatgaagtca 683
Query: 65 acataggaaagtaagaaaatatgaacaattataaccgatataagatttttaaaagccaca 124
||| || |||||||||| |||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 682 acacagaaaagtaagaagatatgaacaattataaccaatacaagatttttaaaagccaca 623
Query: 125 ttccccc--atgaacatatcctaggaatcatccttcaaaattaccacaataaaaagttat 182
||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct: 622 ttccccccaatgaacatgtcataggaatcatccttcaaaattaccatgataaaaagttat 563
Query: 183 ttccttcaaagaaaaatagttctttccacctaccgagtctagaaaatcctatctatattc 242
|||||||||||||||||| ||||||||||||||||||||||||||||||||| || | ||
Sbjct: 562 ttccttcaaagaaaaataattctttccacctaccgagtctagaaaatcctatttacaatc 503
Query: 243 aactgtccagtctttcatcagtattatggcctcctattttctgccattagaagtattgaa 302
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 502 aactgtccagtctttcatcagtattatggcctcctataatctgccattagaagtattgaa 443
Query: 303 aagtttatagctatcatatttacaaatgcacataatatttagatctgctcttcactgaga 362
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 442 aagtttatagctatcgtatttacaaatgcacataatatttaaatctgctcttcactgaga 383
Query: 363 acaactgaatatatacttaatccaagcacaatacaaatgctttagtgttgaaacacatct 422
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 382 acaactgaatatatacttaatccaatcacaatacaaatgctttagtgttgaaacacatct 323
Query: 423 tgtaggtgcaggtgcatggggaaaagtggacttggaagtatgttgtttctgaaggattac 482
||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtaggtgcaggtgcat-gggagaggtggacttggaagtatgttgtttctgaaggattac 264
Query: 483 aaggccaataggtctgagaaaactcaaggtggtcacaaaacaggtctttgttgatga 539
||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 263 taggccaataagtctgagaaaactcaaggtagtcacaaaacaggtctttgtggatga 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 942
Length adjustment: 10
Effective length of query: 529
Effective length of database: 932
Effective search space: 493028
Effective search space used: 493028
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_a15.g1 MSMg01no416_a15.g1 CHROMAT_FILE:
MSMg01no416_a15.g1 PHD_FILE: MSMg01no416_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:35 2005
(577 letters)
>mm_chr1_23121776_23122752
Length = 977
Score = 1046 bits (541), Expect = 0.0
Identities = 568/577 (98%)
Strand = Plus / Minus
Query: 1 atttaaaggaattatggagtaggagatgaatgcgttagggcagagagcctctttttaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atttaaaggaattatggagtaggagatgaatgcgttagggcagagagcctctttttaggc 718
Query: 61 acaaagtggagcccatctaattttagatttctgcttgggcagagcttgtcctggtcttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 acaaagtggagcccatctaattttagatttctgcttgggcagagcttgtcctggtcttaa 658
Query: 121 ctcatgctgtccattgcaaggtcgatcagaagtagtcagaaagacacgattaattggtag 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctcatgctgttcattgcaaggtcgatcagaagtagtcagaaagacacgattaattggtag 598
Query: 181 aggtcatcaaaagagctatctgagtcactgatagtcaccaggagtgaccagttcctttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aggtcatcaaaagagctatctgagtcactgatagtcaccaggagtgaccagttcctttga 538
Query: 241 ttacagaaggtcttaggtgtggggtactatgtcacacaaaccttcagctatggcattgag 300
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttacagcagggcttaggggtggggtactatgtcacacaaaccttcagctatggcattgag 478
Query: 301 cccttgcacagtgcttccgcagcttagcaactttagagaagtttgttgttacttgtttta 360
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cctttgcacagtgcttccgcggcttagcaactttagagaagtttgttgttacttgtttta 418
Query: 361 cttctgcttttagtatggattagaggagtctacacttttggaagtacctgttggtattag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cttctgcttttagtatggattagaggagtctacacttttggaagtacctgttggtattag 358
Query: 421 tgaaccctggattgcaaacggggttaaacaaatcgatgttctgtggaaattctttgatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgaaccctggattgcaaacggggttaaacaaatcgatgttctgtggaaattctttgatcc 298
Query: 481 tctataactgtcagctgtaaacctccatttgcactgctttcaaaatgggaagattgactc 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 297 tctataactgtcagctgtaaacctccatttgcactgctttgaaaatgggaagattgactc 238
Query: 541 tgatttgaggactccagtaaggatcaaacgggtctgt 577
||||||||||||||||| ||||| |||||||||||||
Sbjct: 237 tgatttgaggactccaggaaggaacaaacgggtctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
