BAC Information

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BAC

Clone NameMSMg01-416B10
Chromosome1 (Build37)
Map Location 168,159,986 - 168,160,518
singlet/doubletsinglet
Overlap geneMael
Upstream geneTiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33
Downstream geneLOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416B10.T7 (MSMg01no416_b10.b1)MSMg01-416B10.TJ (MSMg01no416_b10.g1)
ACCAG511990AG511991
length700710
length of high quality
(start - end)		517 (23 - 539)521 (57 - 577)
definitionCHROMAT_FILE: MSMg01no416_b10.b1 PHD_FILE: MSMg01no416_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:38 2005CHROMAT_FILE: MSMg01no416_b10.g1 PHD_FILE: MSMg01no416_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATATTCAGAGGATCCGCGGAATTCCTAAATTTTCCCAGTAACT
TCCGACTCCCTGAAGAGCTGCAAATGGGGCTCTGTAAACCTTCATGTGTT
ACAGGTTGATTGCACTAGAATGAGAAAGCAGAAAAGATTGGAACAGACTT
ATGACCAAGGAAAAACATTCATTCTAGGCCAGGTCCAAGGATGAAATCAC
AGTTGTGCACTATGATAAAACCAGGCCATGTGAAACTGTTGTTTTGAACT
TACAATTAGCTTATAGAATGAAACACTGCTTTGAACTGATAACACCAACA
TCCTTCTGTAACGCCCCTTTTGTGTAACATTTCATCTATGAGGTAATTTT
AAAAAAAATTGCCTGCGAAGGTATAAGAAAGTATAAGAAAGCCAGAGAGA
AGAATTAAAGTATAGCTTGGAGGCTCTGCCCCATTCACCAAATGTATATA
TGTATGTCTGTTTGTCTCTACATACGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTATAAATATGCATAAGCACTTGTAGAGTTGATGAGA
TGGGTGGTATGGCCGGAGNANGGTGTGTGTGTGTGTGCTTGAATCCTCCC
TTTCTTAATTTCCTTTTCCCCAAGGTTCAGGAAGGTTACCCTTCTGCTAG
GCCTTTTGCCTATCCGNTGCGAAGCTCTTGAATAGTTTTTTTTTTTATAG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACACTGGAGCCTTGAAAAGAGTATTCTTATTAAAATACTCATCT
GTAATCAAACTGAAAACACTTCACTCTGATAAAAGTGTGCACAGCAAAAA
TAAGGAAAGTGAGGGAAGAAGAAACTACAACGAATTACTTGTTGGTAAGA
CACTACAAACTAGAGATCATAGCCTTCACACTAAGGCAAAACTAAGTAAA
AAAATCAGAAGACAAGTCAAAACAGCACTTACGAGACAACATAAAAGTGG
CAAGGTGATGGAGGCACTCAGAGGCAGGGGATTGTCCTAGATATGATAAC
CTATTCTAAATAAGAAATTCTAGGCTAGTCAAGGTTGAGACTCCCATCTT
TTAAAAAAAGATCAGCAATAACCTTGTTAAGGAAATTATAGACCTGAAGA
AACAAGTAATTCCAGGTTCACGATGGAAAGGCTACATTATGCAGACATCG
ATCTTCCCCAAAATGACCCAAATATTTACAGATGATCCCAATTTATCAAC
AAGGGCTTTTTGTTTTGGTTTTTTTCTTTGGTTTTTTTTTTTTTTTTTGG
TGAAAGACTGGGTCCAAATTGTGGATAAAAACTTGGGTCAAAATAACTTT
TGATTTTTCCCCAGGCCAGGGGGAAAAGTTATTTAAAACTTTTCCAATTA
TTATGGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_b10.g1 MSMg01no416_b10.g1 CHROMAT_FILE:
MSMg01no416_b10.g1 PHD_FILE: MSMg01no416_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:38 2005
         (521 letters)



>mm_chr1_168159795_168160718
          Length = 924

 Score =  903 bits (467), Expect = 0.0
 Identities = 512/533 (96%), Gaps = 12/533 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactggagccttgaaaagagtattcttattaaaatactcatctgtaatcaaactgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 192 acactggagccttgaaaagagtattcttattaaaatactcatctgcaatcaaactgaaaa 251

                                                                       
Query: 61  ca---------cttcactctgataaaagtgtgcacagcaaaaataaggaaagtgagggaa 111
           ||         |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagaagtaattcttcactctgataaaagtgtgcacagcaaaaataaggaaagtgagggaa 311

                                                                       
Query: 112 gaagaaactacaacgaattacttgttggtaagacactacaaactagagatcatagccttc 171
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 312 gaagaaactacaacgaattacttgttggtaagacactgcaaactagagatcacagccttc 371

                                                                       
Query: 172 acactaaggcaaaactaagt-aaaaaaatcagaagacaagtcaaaac--agcacttacga 228
           | |||||||||||||||||| ||||||| |||||||||| |||||||  ||||||||| |
Sbjct: 372 atactaaggcaaaactaagtaaaaaaaaccagaagacaattcaaaacatagcacttacaa 431

                                                                       
Query: 229 gacaacataaaagtggcaaggtgatggaggcactcagaggcaggggattgtcctagatat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gacaacataaaagtggcaaggtgatggaggcactcagaggcaggggattgtcctagatat 491

                                                                       
Query: 289 gataacctattctaaataagaaattctaggctagtcaaggttgagactcccatcttttaa 348
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 492 gataacctattctaaataagaaattctaggctagtcaaggttgagacttccatcttttaa 551

                                                                       
Query: 349 aaaaagatcagcaataaccttgttaaggaaattatagacctgaagaaacaagtaattcca 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaaaagatcagcaataaccttgttaaggaaattatagacctgaagaaacaagtaattcca 611

                                                                       
Query: 409 ggttcacgatggaaaggctacattatgcagacatcgatcttccccaaaatgacccaaata 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggttcacgatggaaaggctacattatgcagacatcgatcttccccaaaatgacccaaata 671

                                                                
Query: 469 tttacagatgatcccaatttatcaacaagggctttttgttttggtttttttct 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cttacagatgatcccaatttatcaacaagggctttttgttttggtttttttct 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 924
Length adjustment: 10
Effective length of query: 511
Effective length of database: 914
Effective search space:   467054
Effective search space used:   467054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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